RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 ZNF69Q9UC07 566 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 RASD1Q9Y272 281 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 GPR45Q9Y5Y3 372 aa14.04□□□□□ -0.16
VIM-208ENST00000497849 HLA-HP01893 362 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 CXCR1P25024 350 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 CLDN8P56748 225 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 CLDN17P56750 224 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 EPS8Q12929 822 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 BAMBIQ13145 260 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 MAD2L1Q13257 205 aaPredicted RBP14.03□□□□□ -0.16
VIM-208ENST00000497849 ALKBH6Q3KRA9 238 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 ATAD3BQ5T9A4 648 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 TNFAIP8L2Q6P589 184 aaPredicted RBP14.03□□□□□ -0.16
VIM-208ENST00000497849 LEG1Q6P5S2 330 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 CCDC36Q8IYA8 594 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 TEX37Q96LM6 180 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 PRPF18Q99633 342 aaKnown RBP14.03□□□□□ -0.16
VIM-208ENST00000497849 ASIC5Q9NY37 505 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 DUSP13Q9UII6 198 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 RCE1Q9Y256 329 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 WIPI2Q9Y4P8 454 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 NOX1Q9Y5S8 564 aa14.03□□□□□ -0.16
VIM-208ENST00000497849 A0A1W2PPW3 197 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 CFAP73A6NFT4 308 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 ZNF99A8MXY4 864 aaPredicted RBP14.02□□□□□ -0.17
VIM-208ENST00000497849 AGR2O95994 175 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 PRPS1L1P21108 318 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 IL12AP29459 219 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 CCL8P80075 99 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 PHYHD1Q5SRE7 291 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 CMIPQ8IY22 773 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 CCDC197Q8NCU1 140 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 C10orf82Q8WW14 230 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 SIKE1Q9BRV8 207 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 DPY30Q9C005 99 aa14.02□□□□□ -0.17
VIM-208ENST00000497849 AGAP5A6NIR3 686 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 C17orf100A8MU93 164 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 A8MVM7 634 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 FTCDNL1E5RQL4 147 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 CLDN34H7C241 214 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 NPIPB7O75200 414 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 SLC43A1O75387 559 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 NCF2P19878 526 aaPredicted RBP14.01□□□□□ -0.17
VIM-208ENST00000497849 CRYBB2P43320 205 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 RPS23P62266 143 aaKnown RBP14.01□□□□□ -0.17
VIM-208ENST00000497849 PIGFQ07326 219 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 SLC9A3R2Q15599 337 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 GSTA3Q16772 222 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 GSG1Q2KHT4 349 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 PGS1Q32NB8 556 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 TRMT5Q32P41 509 aaKnown RBP14.01□□□□□ -0.17
VIM-208ENST00000497849 GLIPR1L2Q4G1C9 344 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 GPAT3Q53EU6 434 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 KLF17Q5JT82 389 aaPredicted RBP14.01□□□□□ -0.17
VIM-208ENST00000497849 C1orf140Q5VVS0 124 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 OR4F3Q6IEY1 312 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 GPR137CQ8N3F9 429 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 DEFB108BQ8NET1 73 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 OR9I1Q8NGQ6 314 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 GPA33Q99795 319 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 ZNF224Q9NZL3 707 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 B3GAT1Q9P2W7 334 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 SEC14L4Q9UDX3 406 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 NUP50Q9UKX7 468 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 ZNF346Q9UL40 294 aaKnown RBP14.01□□□□□ -0.17
VIM-208ENST00000497849 ARL2BPQ9Y2Y0 163 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 CACNG2Q9Y698 323 aa14.01□□□□□ -0.17
VIM-208ENST00000497849 DSPPQ9NZW4 1301 aa14□□□□□ -0.17
VIM-208ENST00000497849 C1QCP02747 245 aa14□□□□□ -0.17
VIM-208ENST00000497849 TFPTP0C1Z6 253 aa14□□□□□ -0.17
VIM-208ENST00000497849 PNMTP11086 282 aa14□□□□□ -0.17
VIM-208ENST00000497849 CD79AP11912 226 aa14□□□□□ -0.17
VIM-208ENST00000497849 RAD52P43351 418 aa14□□□□□ -0.17
VIM-208ENST00000497849 LCN2P80188 198 aa14□□□□□ -0.17
VIM-208ENST00000497849 MRPL2Q5T653 305 aaKnown RBP14□□□□□ -0.17
VIM-208ENST00000497849 WDFY1Q8IWB7 410 aa14□□□□□ -0.17
VIM-208ENST00000497849 ANKFN1Q8N957 763 aa14□□□□□ -0.17
VIM-208ENST00000497849 SLC25A28Q96A46 364 aa14□□□□□ -0.17
VIM-208ENST00000497849 TSPAN32Q96QS1 320 aa14□□□□□ -0.17
VIM-208ENST00000497849 SLC38A1Q9H2H9 487 aa14□□□□□ -0.17
VIM-208ENST00000497849 PLEK2Q9NYT0 353 aa14□□□□□ -0.17
VIM-208ENST00000497849 MMP24Q9Y5R2 645 aa14□□□□□ -0.17
VIM-208ENST00000497849 IGHV1-69-2A0A0G2JMI3 117 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 HMGN4O00479 90 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 CLPTM1O96005 669 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 GKN3PP0CG01 181 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 IDO1P14902 403 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 UQCRBP14927 111 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 ZNF43P17038 809 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 RPS4Y1P22090 263 aaKnown RBP13.99□□□□□ -0.17
VIM-208ENST00000497849 OMGP23515 440 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 ACAA2P42765 397 aaKnown RBP13.99□□□□□ -0.17
VIM-208ENST00000497849 HPCAP84074 193 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 GALK2Q01415 458 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 SYPL1Q16563 259 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 NKPD1Q17RQ9 610 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 MMEL1Q495T6 779 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 PDCD4Q53EL6 469 aaKnown RBP13.99□□□□□ -0.17
VIM-208ENST00000497849 SPANXN4Q5MJ08 99 aa13.99□□□□□ -0.17
VIM-208ENST00000497849 SAXO2Q658L1 398 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms