RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SC5DO75845 299 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 APEHP13798 732 aaKnown RBP15.03■□□□□ -0
CCDC88B-210ENST00000494566 MST1P26927 711 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 CCR9P51686 369 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 HSF2Q03933 536 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 CDK5R1Q15078 307 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 PON3Q15166 354 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 ELOA3BQ3SY89 546 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 CD276Q5ZPR3 534 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 ELOA3Q8NG57 546 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 OR4D10Q8NGI6 311 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 PTPMT1Q8WUK0 201 aaPredicted RBP15.03■□□□□ -0
CCDC88B-210ENST00000494566 ADAMTS14Q8WXS8 1223 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 LINC00052Q96N35 136 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 SORCS2Q96PQ0 1159 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 OR2M2Q96R28 347 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 FXYD6Q9H0Q3 95 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 INPP5EQ9NRR6 644 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 IKZF2Q9UKS7 526 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 PCDHGA5Q9Y5G8 931 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 DCTN6O00399 190 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 SRMP19623 302 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 CXCL2P19875 107 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 GABRA4P48169 554 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 GPR143P51810 404 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 MAP2K6P52564 334 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 FUT7Q11130 342 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 KLF9Q13886 244 aaPredicted RBP15.03■□□□□ -0
CCDC88B-210ENST00000494566 PXKQ7Z7A4 578 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 OR51A4Q8NGJ6 313 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 OR5M1Q8NGP8 315 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 ANGPTL6Q8NI99 470 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 ANKRD10Q9NXR5 420 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 MTCH2Q9Y6C9 303 aa15.03■□□□□ -0
CCDC88B-210ENST00000494566 A0A1W2PPL8 197 aa15.02■□□□□ -0
CCDC88B-210ENST00000494566 TMEM69Q5SWH9 247 aa15.02■□□□□ -0
CCDC88B-210ENST00000494566 SHISA6Q6ZSJ9 500 aa15.02■□□□□ -0
CCDC88B-210ENST00000494566 ZBTB44Q8NCP5 570 aa15.02■□□□□ -0
CCDC88B-210ENST00000494566 PPP1R14AQ96A00 147 aa15.02■□□□□ -0
CCDC88B-210ENST00000494566 ZMAT3Q9HA38 289 aaKnown RBP15.02■□□□□ -0
CCDC88B-210ENST00000494566 NOX3Q9HBY0 568 aa15.02■□□□□ -0
CCDC88B-210ENST00000494566 NCDNQ9UBB6 729 aa15.02■□□□□ -0
CCDC88B-210ENST00000494566 TRIOBPQ9H2D6 2365 aa15.02■□□□□ -0
CCDC88B-210ENST00000494566 LOC100509620A0A075B734 347 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 MEIKINA0A087WXM9 373 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 PEX14O75381 377 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 ZFPL1O95159 310 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 CSN2P05814 226 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 SULT1A3P0DMM9 295 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 SULT1A4P0DMN0 295 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 PSMA6P60900 246 aaKnown RBP15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 IGLV3-21P80748 117 aaPredicted RBP15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 ELOCQ15369 112 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 VWA2Q5GFL6 755 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 C1orf189Q5VU69 101 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 GPR139Q6DWJ6 353 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 BTN2A1Q7KYR7 527 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 TMPRSS12Q86WS5 348 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 SLC25A38Q96DW6 304 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 KTI12Q96EK9 354 aaPredicted RBP15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 HAO2Q9NYQ3 351 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 PLCL2Q9UPR0 1127 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 BAIAP2Q9UQB8 552 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 KLHDC2Q9Y2U9 406 aa15.02□□□□□ -0.01
CCDC88B-210ENST00000494566 CDK2P24941 298 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 CD38P28907 300 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 PTGS2P35354 604 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 ACTC1P68032 377 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 ACTA1P68133 377 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 ZP2Q05996 745 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 LTBQ06643 244 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 OPCMLQ14982 345 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 TOMM34Q15785 309 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 KLHL26Q53HC5 615 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF782Q6ZMW2 699 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 LRRC69Q6ZNQ3 347 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 PMM1Q92871 262 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 SMIM19Q96E16 107 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 PDE7BQ9NP56 450 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 A0A1B0GVI7 797 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 GAAP10253 952 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 GALP22466 123 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 MMP15P51511 669 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 OR1D5P58170 312 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 CDONQ4KMG0 1287 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 C1QL3Q5VWW1 255 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 NDUFAF7Q7L592 441 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 MESP1Q9BRJ9 268 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 TMEM138Q9NPI0 162 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 NRIP3Q9NQ35 241 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 ICAM5Q9UMF0 924 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 ZNF337Q9Y3M9 751 aa15.01□□□□□ -0.01
CCDC88B-210ENST00000494566 EFCAB7A8K855 629 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 TMEM150CB9EJG8 249 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 L7N2F9 121 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 CDK2AP1O14519 115 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 IFNA7P01567 189 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 IGLV3-19P01714 112 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 OR2T7P0C7T2 308 aa15□□□□□ -0.01
CCDC88B-210ENST00000494566 FASLGP48023 281 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms