RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CDH15P55291 814 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 HOXC5Q00444 222 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 CDK6Q00534 326 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 HGFACQ04756 655 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 MPP2Q14168 576 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 MOGQ16653 247 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 CARD17Q5XLA6 110 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 UNQ6126/PRO20091Q6UXV3 157 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 HIST3H2AQ7L7L0 130 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 PIWIL3Q7Z3Z3 882 aaKnown RBP10.01□□□□□ -0.81
COL6A3-213ENST00000493475 HDDC2Q7Z4H3 204 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 PXKQ7Z7A4 578 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 ARMC8Q8IUR7 673 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 C20orf196Q8IYI0 205 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 NFKBIDQ8NI38 313 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 GTF2H4Q92759 462 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 HIST1H2ACQ93077 130 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 MAL2Q969L2 176 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 TAAR8Q969N4 342 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 MRPL24Q96A35 216 aaKnown RBP10.01□□□□□ -0.81
COL6A3-213ENST00000493475 FOXB1Q99853 325 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 TMEM43Q9BTV4 400 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 LRMDAQ9H2I8 198 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 TCF7L2Q9NQB0 619 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 SLC6A13Q9NSD5 602 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 MRPL39Q9NYK5 338 aaKnown RBP10.01□□□□□ -0.81
COL6A3-213ENST00000493475 KLHL14Q9P2G3 628 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 B3GAT1Q9P2W7 334 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-213ENST00000493475 SLC7A8Q9UHI5 535 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10□□□□□ -0.81
COL6A3-213ENST00000493475 LRP5LA4QPB2 252 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 FZD7O75084 574 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 HLA-HP01893 362 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 ARAFP10398 606 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 ACHEP22303 614 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 PTDSS1P48651 473 aaKnown RBP10□□□□□ -0.81
COL6A3-213ENST00000493475 SMCPP49901 116 aaPredicted RBP10□□□□□ -0.81
COL6A3-213ENST00000493475 TMEM33P57088 247 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 MRPS11P82912 194 aaKnown RBP10□□□□□ -0.81
COL6A3-213ENST00000493475 TEKQ02763 1124 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 EGR4Q05215 589 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 SCARB2Q14108 478 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 NKPD1Q17RQ9 610 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 GTDC1Q4AE62 458 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 GLIPR1L2Q4G1C9 344 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 SLC2A7Q6PXP3 512 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 ZNF627Q7L945 461 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 LINGO2Q7L985 606 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 SLC30A8Q8IWU4 369 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 TMEM123Q8N131 208 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 HIPK4Q8NE63 616 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 OR1J2Q8NGS2 313 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 RDH5Q92781 318 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 SPDL1Q96EA4 605 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 PAIP1Q9H074 479 aaKnown RBP10□□□□□ -0.81
COL6A3-213ENST00000493475 NELFAQ9H3P2 528 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 TPK1Q9H3S4 243 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 ZNF385DQ9H6B1 395 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 RAB21Q9UL25 225 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 USH1CQ9Y6N9 552 aa10□□□□□ -0.81
COL6A3-213ENST00000493475 TRAF3IP2O43734 574 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-213ENST00000493475 MGRN1O60291 552 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 FMO6PO60774 539 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 SERPINI2O75830 405 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 CELA3BP08861 270 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 ADORA3P0DMS8 318 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 OR8G3PP0DMU2 310 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 SAGP10523 405 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-213ENST00000493475 CBLP22681 906 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 MRPL19P49406 292 aaKnown RBP9.99□□□□□ -0.81
COL6A3-213ENST00000493475 WDR4P57081 412 aaKnown RBP9.99□□□□□ -0.81
COL6A3-213ENST00000493475 MAGOHP61326 146 aaKnown RBP9.99□□□□□ -0.81
COL6A3-213ENST00000493475 RAB1AP62820 205 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 PLP2Q04941 152 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 PIGFQ07326 219 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 RIN1Q13671 783 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 OR1Q1Q15612 314 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 PCGF3Q3KNV8 242 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 LRIF1Q5T3J3 769 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 TMEM53Q6P2H8 277 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 TMEM154Q6P9G4 183 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 ZNF613Q6PF04 617 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 C12orf54Q6X4T0 127 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 RINLQ6ZS11 566 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 CDK20Q8IZL9 346 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 OR9I1Q8NGQ6 314 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 OR5J2Q8NH18 312 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 OR51F2Q8NH61 342 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 LRRC8CQ8TDW0 803 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 ZNF418Q8TF45 676 aaPredicted RBP9.99□□□□□ -0.81
COL6A3-213ENST00000493475 ZFAND2BQ8WV99 257 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 RASSF5Q8WWW0 418 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 SLC41A3Q96GZ6 507 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 OR52B2Q96RD2 323 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 JMJD8Q96S16 334 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 KCNN2Q9H2S1 579 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 TMEM38AQ9H6F2 299 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 SLCO1C1Q9NYB5 712 aa9.99□□□□□ -0.81
COL6A3-213ENST00000493475 CCDC167Q9P0B6 97 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms