RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 OR8D4Q8NGM9 314 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 SPTSSAQ969W0 71 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 EXOGQ9Y2C4 368 aaKnown RBP13.39□□□□□ -0.27
HDAC6-220ENST00000477528 OPN1LWP04000 364 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 FAPQ12884 760 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 SMAD4Q13485 552 aaKnown RBP13.39□□□□□ -0.27
HDAC6-220ENST00000477528 MELKQ14680 651 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 FCN2Q15485 313 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 Q6ZS52 159 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 ABHD12BQ7Z5M8 362 aaPredicted RBP13.39□□□□□ -0.27
HDAC6-220ENST00000477528 C20orf141Q9NUB4 165 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 STEAP1Q9UHE8 339 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 GCM2O75603 506 aaPredicted RBP13.39□□□□□ -0.27
HDAC6-220ENST00000477528 ALDOBP05062 364 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 AKR1C4P17516 323 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 GALP22466 123 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 CSNK2A1P68400 391 aaPredicted RBP13.39□□□□□ -0.27
HDAC6-220ENST00000477528 PRRT1Q99946 306 aa13.39□□□□□ -0.27
HDAC6-220ENST00000477528 F5H0A9 414 aaPredicted RBP13.38□□□□□ -0.27
HDAC6-220ENST00000477528 CLUP10909 449 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 SLC26A5P58743 744 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 FZD2Q14332 565 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 CDK10Q15131 360 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 AADACL4Q5VUY2 407 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 NUDT22Q9BRQ3 303 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 NXF5Q9H1B4 397 aaKnown RBP13.38□□□□□ -0.27
HDAC6-220ENST00000477528 C1orf198Q9H425 327 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 ARPC5O15511 151 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 ALOX12BO75342 701 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 SPNP16150 400 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 HTR2CP28335 458 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 CCR9P51686 369 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 HERV-K104P61576 105 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 RPL18Q07020 188 aaKnown RBP13.38□□□□□ -0.27
HDAC6-220ENST00000477528 RBMS2Q15434 407 aaKnown RBP13.38□□□□□ -0.27
HDAC6-220ENST00000477528 SLC25A30Q5SVS4 291 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 ELMOD2Q8IZ81 293 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 C17orf50Q8WW18 174 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 A0A087WUJ7 227 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 OR6C76A6NM76 312 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 PLP2Q04941 152 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 VWA2Q5GFL6 755 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 OR5H2Q8NGV7 314 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 SMAP2Q8WU79 429 aaPredicted RBP13.38□□□□□ -0.27
HDAC6-220ENST00000477528 PCOLCE2Q9UKZ9 415 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 KCNIP3Q9Y2W7 256 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 FRG2CA6NGY1 282 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 METTL12A8MUP2 240 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 FABP7O15540 132 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 IL33O95760 270 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 RAF1P04049 648 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 CALCBP10092 127 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 ITGA3P26006 1051 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 ARHGDIBP52566 201 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 DEFA5Q01523 94 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 PUDPQ08623 228 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 GRK1Q15835 563 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 ZNF615Q8N8J6 731 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 SIT1Q9Y3P8 196 aa13.38□□□□□ -0.27
HDAC6-220ENST00000477528 A0A1W2PS29 197 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 F5H5K5 113 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 MAGEB4O15481 346 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 ICOSLGO75144 302 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 CRTAPO75718 401 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 TSPAN9O75954 239 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 PRH1P02810 166 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 POU3F3P20264 500 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 OR10A3P58181 314 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 RAP2BP61225 183 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 EEF1A1P68104 462 aaKnown RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 P4HA3Q7Z4N8 544 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 ARIH2OSQ8N7S6 290 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 OR13C5Q8NGS8 318 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 PHB2Q99623 299 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 ACAD8Q9UKU7 415 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 LMO7DNF2Z398 122 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 SCGB1D2O95969 90 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 FNTBP49356 437 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 CCR6P51684 374 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 CHRDL2Q6WN34 429 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 WDR88Q6ZMY6 472 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 PXKQ7Z7A4 578 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 AGBL5Q8NDL9 886 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 EMC7Q9NPA0 242 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 ZNF346Q9UL40 294 aaKnown RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 SPINT1O43278 529 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 SRP9P49458 86 aaKnown RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 COL28A1Q2UY09 1125 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 NKAIN1Q4KMZ8 207 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 GSG1LQ6UXU4 331 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 LDAHQ9H6V9 325 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 FBXO34Q9NWN3 711 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 DNAJB12Q9NXW2 375 aaKnown RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 NXT1Q9UKK6 140 aaKnown RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 TNFSF14O43557 240 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 EFEMP2O95967 443 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 EIF4EP06730 217 aaKnown RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 NME1P15531 152 aaKnown RBP13.37□□□□□ -0.27
HDAC6-220ENST00000477528 MSX1P28360 303 aa13.37□□□□□ -0.27
HDAC6-220ENST00000477528 POU3F4P49335 361 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms