RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 NEFHP12036 1026 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 NQO2P16083 231 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ANOS1P23352 680 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 FOXN2P32314 431 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 VHLP40337 213 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 YAP1P46937 504 aaKnown RBP3.41□□□□□ -1.86
VPS13D-207ENST00000476169 EFNA3P52797 238 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 SKP1P63208 163 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 DPYSL3Q14195 570 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ABRAXAS2Q15018 415 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ZNF146Q15072 292 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 GABRA6Q16445 453 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ZNF876PQ49A33 203 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 OR2G6Q5TZ20 316 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ANKRD26P1Q6NSI1 321 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ARMCX5Q6P1M9 558 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 SPESP1Q6UW49 350 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 MBOAT1Q6ZNC8 495 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 SLC25A48Q6ZT89 311 aaKnown RBP3.41□□□□□ -1.86
VPS13D-207ENST00000476169 FAM122BQ7Z309 247 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 CMC1Q7Z7K0 106 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 PLA2G4DQ86XP0 818 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 APOBEC3FQ8IUX4 373 aaKnown RBP3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ZNF502Q8TBZ5 544 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 CXorf40AQ8TE69 158 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 NDRG1Q92597 394 aaKnown RBP3.41□□□□□ -1.86
VPS13D-207ENST00000476169 MYDGFQ969H8 173 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 CMTM7Q96FZ5 175 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 GMPPAQ96IJ6 420 aaPredicted RBP3.41□□□□□ -1.86
VPS13D-207ENST00000476169 RNF170Q96K19 258 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 MS4A4EQ96PG1 132 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ZNF317Q96PQ6 595 aaPredicted RBP3.41□□□□□ -1.86
VPS13D-207ENST00000476169 OR5B12Q96R08 314 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 F2RL3Q96RI0 385 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ECSITQ9BQ95 431 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 MRPL45Q9BRJ2 306 aaKnown RBP3.41□□□□□ -1.86
VPS13D-207ENST00000476169 ACTR6Q9GZN1 396 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 SDF2L1Q9HCN8 221 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 HRASLS2Q9NWW9 162 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 MMP17Q9ULZ9 603 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 PROCRQ9UNN8 238 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 SLC17A4Q9Y2C5 497 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 L3MBTL1Q9Y468 752 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 KIF13AQ9H1H9 1805 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 FGD6Q6ZV73 1430 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 TIAM1Q13009 1591 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 SAMD9LQ8IVG5 1584 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 A2MP01023 1474 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 CAMSAP2Q08AD1 1489 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 PLEKHH2Q8IVE3 1493 aa3.41□□□□□ -1.86
VPS13D-207ENST00000476169 IGHV3OR16-12A0A075B7B8 117 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 LOC100131303A0A0U1RQF7 123 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 SMIM28A0A1B0GU29 152 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 MEX3AA1L020 520 aaKnown RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ERVV-2B6SEH9 535 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 E9PQ18 207 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 G3V3Y1 287 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 K7EQG2 157 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 CCL21O00585 134 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 PLPP1O14494 284 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 RFXANKO14593 260 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 CALUO43852 315 aaPredicted RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 EIF4E2O60573 245 aaKnown RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ENTPD5O75356 428 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 EEDO75530 441 aaKnown RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 SCRG1O75711 98 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 NOL4O94818 638 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ZNF432O94892 652 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 IGHG1P01857 330 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 H2AFZP0C0S5 128 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ACSM4P0C7M7 580 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 GNB3P16520 340 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ATP6V1B2P21281 511 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 IL12BP29460 328 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 SHMT2P34897 504 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 KDM5CP41229 1560 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 BIDP55957 195 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 FBXW4P57775 412 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 RPS15AP62244 130 aaKnown RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 RPS14P62263 151 aaKnown RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 TLE4Q04727 773 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 CHRNB3Q05901 458 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 SIGLEC14Q08ET2 396 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ORC2Q13416 577 aaPredicted RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 VAMP3Q15836 100 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 AANATQ16613 207 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ASCL4Q6XD76 172 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 CERS6Q6ZMG9 384 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 Q6ZN92 141 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 GDPGP1Q6ZNW5 385 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 C18orf65Q6ZTR6 163 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 PID1Q7Z2X4 250 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 APRG1Q8IVJ8 170 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 SELENOHQ8IZQ5 122 aaKnown RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 LINC00469Q8N7U9 141 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 C9orf106Q8NAJ2 232 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ZNF564Q8TBZ8 553 aaPredicted RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 TMEM190Q8WZ59 177 aa3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ZNF501Q96CX3 271 aaPredicted RBP3.4□□□□□ -1.87
VPS13D-207ENST00000476169 ART5Q96L15 291 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms