RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 PUDPQ08623 228 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 NPTX1Q15818 432 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 FXNQ16595 210 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 WDR88Q6ZMY6 472 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TSPYL5Q86VY4 417 aaPredicted RBP10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CDK20Q8IZL9 346 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SVOPLQ8N434 492 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 HIPK4Q8NE63 616 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GPR32P1Q8NGA4 272 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 DYDC1Q8WWB3 177 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 HPS1Q92902 700 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 MS4A3Q96HJ5 214 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF607Q96SK3 696 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 EPYCQ99645 322 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ARHGDIGQ99819 225 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF426Q9BUY5 554 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF385DQ9H6B1 395 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TMEM27Q9HBJ8 222 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CORO2BQ9UQ03 480 aa10.56□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 LRP5LA4QPB2 252 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 VSTM5A8MXK1 200 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SERPINB7O75635 380 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 MT-ATP6P00846 226 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TGFAP01135 160 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SRD5A1P18405 259 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GLRXP35754 106 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 AQP5P55064 265 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RGS8P57771 180 aaPredicted RBP10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RBBP4Q09028 425 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZP4Q12836 540 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 NPRL3Q12980 569 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 DAG1Q14118 895 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GSG1Q2KHT4 349 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 AGKQ53H12 422 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF613Q6PF04 617 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 LRFN4Q6PJG9 635 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SPATA21Q7Z572 469 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RETREG3Q86VR2 466 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ARMC8Q8IUR7 673 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 OR4D11Q8NGI4 311 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 FGFBP3Q8TAT2 258 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 UBASH3BQ8TF42 649 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CKAP2Q8WWK9 683 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TMEM54Q969K7 222 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 MRPL24Q96A35 216 aaKnown RBP10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 MRPL37Q9BZE1 423 aaKnown RBP10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RACGAP1Q9H0H5 632 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PCDHAC1Q9H158 963 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TAS2R5Q9NYW4 299 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CMAHPQ9Y471 501 aa10.55□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 EVPLLA8MZ36 301 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 M0QX08 132 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CHP2O43745 196 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SYNGR3O43761 229 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ADRA2AP08913 450 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 NQO1P15559 274 aaKnown RBP10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 AQP1P29972 269 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GZMMP51124 257 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CHN2P52757 468 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CRYBA2P53672 197 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PMS2P3Q13401 168 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SNTB2Q13425 540 aaKnown RBP10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CAMK2DQ13557 499 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SELPLGQ14242 412 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SQLEQ14534 574 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 IQCCQ4KMZ1 466 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TTMPQ5BVD1 217 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ELFN2Q5R3F8 820 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CARD17Q5XLA6 110 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 KRT80Q6KB66 452 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF813Q6ZN06 617 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 IL17RELQ6ZVW7 336 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PIWIL3Q7Z3Z3 882 aaKnown RBP10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ZNF584Q8IVC4 421 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SMYD1Q8NB12 490 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 OR6T1Q8NGN1 323 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 OR5J2Q8NH18 312 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 OR6X1Q8NH79 312 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 LRRC8CQ8TDW0 803 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CGREF1Q99674 301 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 MCHR1Q99705 422 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 FOXB1Q99853 325 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ASPNQ9BXN1 380 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 KAT8Q9H7Z6 458 aaKnown RBP10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CHODLQ9H9P2 273 aa10.54□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 WNK2Q9Y3S1 2297 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 SH3PXD2BA1X283 911 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 LYNX1G3V0Z9 82 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 M0R3H8 397 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 ASAH2BP0C7U1 165 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 LYNX1P0DP58 116 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 IFNGR1P15260 489 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 B4GALT1P15291 398 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CD247P20963 164 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 GIPRP48546 466 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CDH15P55291 814 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 RAB1AP62820 205 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 PIGFQ07326 219 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 TRIP10Q15642 601 aa10.53□□□□□ -0.72
MSH5-SAPCD1-205ENST00000476085 CARTPTQ16568 116 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms