RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ECSITQ9BQ95 431 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 ULBP2Q9BZM5 246 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 MOV10Q9HCE1 1003 aaKnown RBP13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 USP22Q9UPT9 525 aa13.65□□□□□ -0.22
CCDC88B-205ENST00000472524 A0A096LNT2 108 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 FXYD1O00168 92 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 CH25HO95992 272 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 TNFRSF1BP20333 461 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 SERPINF1P36955 418 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 EFNA4P52798 201 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 CRYBA2P53672 197 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 BIDP55957 195 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF74Q16587 644 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 PODNL1Q6PEZ8 512 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF813Q6ZN06 617 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 CCDC80Q76M96 950 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 SLC46A3Q7Z3Q1 461 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 PXKQ7Z7A4 578 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 SNX32Q86XE0 403 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 FAM169BQ8N8A8 192 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 OR4F15Q8NGB8 312 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 OR8J3Q8NGG0 315 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 RASSF5Q8WWW0 418 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 PROX1Q92786 737 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 LRR1Q96L50 414 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 SORCS2Q96PQ0 1159 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 SH3GL1Q99961 368 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 VRK1Q99986 396 aaPredicted RBP13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 SAR1AQ9NR31 198 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 POFUT2Q9Y2G5 429 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 FKBP7Q9Y680 259 aa13.64□□□□□ -0.23
CCDC88B-205ENST00000472524 IGHV2OR16-5A0A0B4J2B6 119 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 BBIP1A8MTZ0 92 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 A8MV72 311 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 SHOX2O60902 331 aaPredicted RBP13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 HLA-HP01893 362 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 OR4A8P0C604 315 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 UMPSP11172 480 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 CD79AP11912 226 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 IFNGR1P15260 489 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 B4GALT1P15291 398 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 ARR3P36575 388 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 CSNK1A1P48729 337 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 HGFACQ04756 655 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 MELKQ14680 651 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 MAPRE2Q15555 327 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 ADIPOQQ15848 244 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 NHLRC1Q6VVB1 395 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 CARM1Q86X55 608 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 CALHM3Q86XJ0 350 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 LRRC17Q8N6Y2 441 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 ANKS4BQ8N8V4 417 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 NANOS1Q8WY41 292 aaKnown RBP13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 NANSQ9NR45 359 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 MRGBPQ9NV56 204 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 ZNF446Q9NWS9 450 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 SH3GLB1Q9Y371 365 aa13.63□□□□□ -0.23
CCDC88B-205ENST00000472524 LOC100653049A0A140TA62 436 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 B9A039 149 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 RNF13O43567 381 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 KRT34O76011 436 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 PDE5AO76074 875 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 IFNA2P01563 188 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 HIST1H2ABP04908 130 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 CSF3P09919 207 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 SLC25A16P16260 332 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 THBS4P35443 961 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 TAS2R41P59536 307 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 GUCY1A3Q02108 690 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 PIGFQ07326 219 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 CARTPTQ16568 116 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 CHRFAM7AQ494W8 412 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 LRRC23Q53EV4 343 aaPredicted RBP13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 COQ5Q5HYK3 327 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 DEF8Q6ZN54 512 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 SLC35D2Q76EJ3 337 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 HIST3H2AQ7L7L0 130 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 CCDC36Q8IYA8 594 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 NUP37Q8NFH4 326 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 C10orf105Q8TEF2 133 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 HIST1H2ACQ93077 130 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 MPP4Q96JB8 637 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 FOXB1Q99853 325 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 PRSS27Q9BQR3 290 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 PCDHAC1Q9H158 963 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 NOX3Q9HBY0 568 aa13.62□□□□□ -0.23
CCDC88B-205ENST00000472524 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 hCG_2039718K7EN88 272 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 F12P00748 615 aaPredicted RBP13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 PDLIM4P50479 330 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 SNTB2Q13425 540 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 GSG1Q2KHT4 349 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 TMEM249Q2WGJ8 235 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 C6orf52Q5T4I8 152 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 KRT80Q6KB66 452 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 ERICH5Q6P6B1 374 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 NANOGNBQ7Z5D8 188 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 PCYOX1LQ8NBM8 494 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 PFN4Q8NHR9 129 aa13.61□□□□□ -0.23
CCDC88B-205ENST00000472524 MS4A3Q96HJ5 214 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms