RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 ZNF74Q16587 644 aa14.12□□□□□ -0.15
COL9A3-208ENST00000469802 CARD17Q5XLA6 110 aa14.12□□□□□ -0.15
COL9A3-208ENST00000469802 CCDC80Q76M96 950 aa14.12□□□□□ -0.15
COL9A3-208ENST00000469802 RBM45Q8IUH3 476 aaKnown RBP14.12□□□□□ -0.15
COL9A3-208ENST00000469802 OR10A6Q8NH74 314 aa14.12□□□□□ -0.15
COL9A3-208ENST00000469802 NOX3Q9HBY0 568 aa14.12□□□□□ -0.15
COL9A3-208ENST00000469802 ZNF224Q9NZL3 707 aa14.12□□□□□ -0.15
COL9A3-208ENST00000469802 TRAPPC13A5PLN9 417 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 THBS4P35443 961 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 PDLIM4P50479 330 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 NPRL3Q12980 569 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 CAMK2DQ13557 499 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 VMACQ2NL98 169 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 INTS11Q5TA45 600 aaKnown RBP14.11□□□□□ -0.15
COL9A3-208ENST00000469802 NANOGP8Q6NSW7 305 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 VHLLQ6RSH7 139 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 SLC46A3Q7Z3Q1 461 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 CALHM3Q86XJ0 350 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 C10orf53Q8N6V4 93 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 ANKS4BQ8N8V4 417 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 IL17RDQ8NFM7 739 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 MPP4Q96JB8 637 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 PRSS27Q9BQR3 290 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 TMEM120AQ9BXJ8 343 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 ULBP2Q9BZM5 246 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 SLC19A3Q9BZV2 496 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 NANOGQ9H9S0 305 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 MYOZ1Q9NP98 299 aaPredicted RBP14.11□□□□□ -0.15
COL9A3-208ENST00000469802 B3GAT2Q9NPZ5 323 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 TMEM160Q9NX00 188 aa14.11□□□□□ -0.15
COL9A3-208ENST00000469802 HLA-HP01893 362 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 IGFBP1P08833 259 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-208ENST00000469802 ADORA3P0DMS8 318 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 IGHV4-31P0DP07 118 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 B4GALT1P15291 398 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 ZNF14P17017 642 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-208ENST00000469802 USF1P22415 310 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-208ENST00000469802 ZP4Q12836 540 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 GSG1Q2KHT4 349 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 RABL3Q5HYI8 236 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 COQ5Q5HYK3 327 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 ZNF813Q6ZN06 617 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 OR8J3Q8NGG0 315 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 VANGL1Q8TAA9 524 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-208ENST00000469802 RASSF5Q8WWW0 418 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 TMEM54Q969K7 222 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 DOK1Q99704 481 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 FOXB1Q99853 325 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 TAS2R5Q9NYW4 299 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 ZNF229Q9UJW7 825 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 FBXO9Q9UK97 447 aaPredicted RBP14.1□□□□□ -0.15
COL9A3-208ENST00000469802 SLC7A7Q9UM01 511 aa14.1□□□□□ -0.15
COL9A3-208ENST00000469802 LOC390937A0A1W2PQ73 354 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 TMEM129A0AVI4 362 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 ZNF726A6NNF4 738 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 SERPINI2O75830 405 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 ASAH2BP0C7U1 165 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 IFNGR1P15260 489 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 ZNF16P17020 682 aaPredicted RBP14.09□□□□□ -0.15
COL9A3-208ENST00000469802 NPR2P20594 1047 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 AHCYP23526 432 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 NR4A2P43354 598 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 CAPZA2P47755 286 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 CSNK1A1P48729 337 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 BIDP55957 195 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 SNTB2Q13425 540 aaKnown RBP14.09□□□□□ -0.15
COL9A3-208ENST00000469802 CHRFAM7AQ494W8 412 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 CGB2Q6NT52 195 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 CXXC5Q7LFL8 322 aaKnown RBP14.09□□□□□ -0.15
COL9A3-208ENST00000469802 SNX32Q86XE0 403 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 OR6N1Q8NGY5 312 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 OR6X1Q8NH79 312 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 MS4A3Q96HJ5 214 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 VRK1Q99986 396 aaPredicted RBP14.09□□□□□ -0.15
COL9A3-208ENST00000469802 PIMREGQ9BSJ6 248 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 DENND2DQ9H6A0 471 aaPredicted RBP14.09□□□□□ -0.15
COL9A3-208ENST00000469802 NANSQ9NR45 359 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 MRGBPQ9NV56 204 aa14.09□□□□□ -0.15
COL9A3-208ENST00000469802 C11orf98E9PRG8 122 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 hCG_2039718K7EN88 272 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 CH25HO95992 272 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 ZNF35P13682 527 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 NR4A1P22736 598 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 LSM11P83369 360 aaKnown RBP eCLIP14.08□□□□□ -0.162e-9■■□□□ 12
COL9A3-208ENST00000469802 CYLC2Q14093 348 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-208ENST00000469802 DAG1Q14118 895 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 MSMPQ1L6U9 139 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 CYB5R2Q6BCY4 276 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 TTC33Q6PID6 262 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-208ENST00000469802 SLC35D2Q76EJ3 337 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 SVOPLQ8N434 492 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 LRRC17Q8N6Y2 441 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 SLC26A7Q8TE54 656 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 LRRC58Q96CX6 371 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 MEPEQ9NQ76 525 aaPredicted RBP14.08□□□□□ -0.16
COL9A3-208ENST00000469802 POFUT2Q9Y2G5 429 aa14.08□□□□□ -0.16
COL9A3-208ENST00000469802 SVEP1Q4LDE5 3571 aa14.07□□□□□ -0.16
COL9A3-208ENST00000469802 IGHV4-61A0A0C4DH41 118 aa14.07□□□□□ -0.16
COL9A3-208ENST00000469802 BBIP1A8MTZ0 92 aa14.07□□□□□ -0.16
COL9A3-208ENST00000469802 KPNA4O00629 521 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms