RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 CA13Q8N1Q1 262 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 AMER3Q8N944 861 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 FAM83FQ8NEG4 500 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 OR6K6Q8NGW6 343 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 CASTOR1Q8WTX7 329 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 RPL3LQ92901 407 aaKnown RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 MACROD1Q9BQ69 325 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 B3GNT4Q9C0J1 378 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 PRO3102Q9H379 93 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 NMNAT1Q9HAN9 279 aaPredicted RBP7.04□□□□□ -1.28
USP54-210ENST00000466048 DUSP22Q9NRW4 184 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 KIF25Q9UIL4 384 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 CBLCQ9ULV8 474 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 TMEM14AQ9Y6G1 99 aa7.04□□□□□ -1.28
USP54-210ENST00000466048 TRAV17A0A0B4J275 112 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 GGT3PA6NGU5 568 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 IDSB3KWA1 339 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 RGS13O14921 159 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 FABP7O15540 132 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 CTSVO60911 334 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 GUSBP08236 651 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 GLP1RP43220 463 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 RAB40BQ12829 278 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 PAN3Q58A45 887 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 TMEM225Q6GV28 225 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 SLC22A25Q6T423 547 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 CPEB2Q7Z5Q1 589 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 OR4N5Q8IXE1 308 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 DNAJC22Q8N4W6 341 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 PXT1Q8NFP0 134 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 PATE1Q8WXA2 126 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 TBX5Q99593 518 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 RBM38Q9H0Z9 239 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 NANSQ9NR45 359 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 SLC22A11Q9NSA0 550 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 KCMF1Q9P0J7 381 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 DHCR7Q9UBM7 475 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 YARS2Q9Y2Z4 477 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 LOC105369274A0A096LPK9 316 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 LINC01387J3KSC0 135 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 ZNF780AO75290 641 aaPredicted RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 IFNA5P01569 189 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 CBLP22681 906 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 S100A11P31949 105 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 CCL11P51671 97 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 ZNF616Q08AN1 781 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 C17orf67Q0P5P2 114 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 RUNX2Q13950 521 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 COTL1Q14019 142 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 DUSP7Q16829 419 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 CLEC12AQ5QGZ9 265 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 MAMDC2Q7Z304 686 aaPredicted RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 ZNF100Q8IYN0 542 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 TCTE3Q8IZS6 198 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 OR4N4Q8N0Y3 316 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 ZNF565Q8N9K5 539 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 TRMT10AQ8TBZ6 339 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 SCGB1C1Q8TD33 95 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 NEK7Q8TDX7 302 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 OIT3Q8WWZ8 545 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 MALSU1Q96EH3 234 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 LRR1Q96L50 414 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 CCNL2Q96S94 520 aaPredicted RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 SULT4A1Q9BR01 284 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 DDA1Q9BW61 102 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 ZNF768Q9H5H4 540 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 A0A1W2PR77 199 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 ERCC1P07992 297 aaPredicted RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 AHCYP23526 432 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 MTFR2Q6P444 385 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 VASH1Q7L8A9 365 aaPredicted RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 B3GNT8Q7Z7M8 397 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 OR5D16Q8NGK9 328 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 FGF11Q92914 225 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 ADAD1Q96M93 576 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 HIST1H2AAQ96QV6 131 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 NRTNQ99748 197 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 AICDAQ9GZX7 198 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 MEGF11A6BM72 1044 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 SOX14O95416 240 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 IL33O95760 270 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 RAF1P04049 648 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 ZNF20P17024 532 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 LAPTM4AQ15012 233 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 MAPK14Q16539 360 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 LRRC37A5PQ49AS3 106 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 HEPHL1Q6MZM0 1159 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 CD300LDQ6UXZ3 194 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 KCTD20Q7Z5Y7 419 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 TMEM200AQ86VY9 491 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 TMEM105Q8N8V8 129 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 CLRN3Q8NCR9 226 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 ACOT11Q8WXI4 607 aaPredicted RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 ARHGDIGQ99819 225 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 QRSL1Q9H0R6 528 aaKnown RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 TCEAL2Q9H3H9 227 aaPredicted RBP7.03□□□□□ -1.28
USP54-210ENST00000466048 DUSP21Q9H596 190 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 LIN7BQ9HAP6 207 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 SDHAF2Q9NX18 166 aa7.03□□□□□ -1.28
USP54-210ENST00000466048 SH3BGRL2Q9UJC5 107 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms