RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 B4GALT1P15291 398 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 PDLIM4P50479 330 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 EFNB3Q15768 340 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 ADIPOQQ15848 244 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 ZNF74Q16587 644 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 GSG1Q2KHT4 349 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 TMEM249Q2WGJ8 235 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 NANOGP8Q6NSW7 305 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 ERICH5Q6P6B1 374 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 WDR88Q6ZMY6 472 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 MYPOPQ86VE0 399 aaPredicted RBP12.11□□□□□ -0.47
USP4-206ENST00000461553 OR4D11Q8NGI4 311 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 C10orf105Q8TEF2 133 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 LRRC58Q96CX6 371 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 TNFRSF13CQ96RJ3 184 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 FOXB1Q99853 325 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 VRK1Q99986 396 aaPredicted RBP12.11□□□□□ -0.47
USP4-206ENST00000461553 ECSITQ9BQ95 431 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 PIMREGQ9BSJ6 248 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 SLC19A3Q9BZV2 496 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 PCDHAC1Q9H158 963 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 ZNF442Q9H7R0 627 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 NANOGQ9H9S0 305 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 MYOZ1Q9NP98 299 aaPredicted RBP12.11□□□□□ -0.47
USP4-206ENST00000461553 NANSQ9NR45 359 aa12.11□□□□□ -0.47
USP4-206ENST00000461553 FBXO9Q9UK97 447 aaPredicted RBP12.11□□□□□ -0.47
USP4-206ENST00000461553 IGHV2OR16-5A0A0B4J2B6 119 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 ZNF503-AS2A6NEH8 195 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 A8MV72 311 aaPredicted RBP12.1□□□□□ -0.47
USP4-206ENST00000461553 VSTM5A8MXK1 200 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 FXYD1O00168 92 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 LY6HO94772 140 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 CH25HO95992 272 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 F12P00748 615 aaPredicted RBP12.1□□□□□ -0.47
USP4-206ENST00000461553 ERCC1P07992 297 aaPredicted RBP12.1□□□□□ -0.47
USP4-206ENST00000461553 CD79AP11912 226 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 IFNGR1P15260 489 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 PPOXP50336 477 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 GZMMP51124 257 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 BIDP55957 195 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 TAS2R41P59536 307 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 LOXL1Q08397 574 aaPredicted RBP12.1□□□□□ -0.47
USP4-206ENST00000461553 SNTB2Q13425 540 aaKnown RBP12.1□□□□□ -0.47
USP4-206ENST00000461553 CARTPTQ16568 116 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 MST1LQ2TV78 715 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 RABL3Q5HYI8 236 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 C6orf52Q5T4I8 152 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 LINC00114Q6XXX2 140 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 CCDC80Q76M96 950 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 NANOGNBQ7Z5D8 188 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 RBM45Q8IUH3 476 aaKnown RBP12.1□□□□□ -0.47
USP4-206ENST00000461553 IL17RDQ8NFM7 739 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 TXNDC15Q96J42 360 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 PLK3Q9H4B4 646 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 ZNF229Q9UJW7 825 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 BAG5Q9UL15 447 aa12.1□□□□□ -0.47
USP4-206ENST00000461553 KIAA1324LA8MWY0 1029 aaPredicted RBP12.09□□□□□ -0.47
USP4-206ENST00000461553 hCG_2039718K7EN88 272 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 NDUFS8O00217 210 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 RNF13O43567 381 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 GPRIN2O60269 458 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 ENTPD5O75356 428 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 RAB36O95755 333 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 NPPAP01160 153 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 IFNA14P01570 189 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 HLA-HP01893 362 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 THY1P04216 161 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 HIST1H2ABP04908 130 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 VLDLRP98155 873 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 KLF10Q13118 480 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 DAG1Q14118 895 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 MELKQ14680 651 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 LRRC23Q53EV4 343 aaPredicted RBP12.09□□□□□ -0.47
USP4-206ENST00000461553 KRT80Q6KB66 452 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 DEF8Q6ZN54 512 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 SLC35D2Q76EJ3 337 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 HIST3H2AQ7L7L0 130 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 ZNF627Q7L945 461 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 CARM1Q86X55 608 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 ANKS4BQ8N8V4 417 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 PCYOX1LQ8NBM8 494 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 HIST1H2ACQ93077 130 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 ZNF566Q969W8 418 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 ZNF426Q9BUY5 554 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 POLR2J2Q9GZM3 115 aaKnown RBP12.09□□□□□ -0.47
USP4-206ENST00000461553 POLR2J3Q9H1A7 115 aaKnown RBP12.09□□□□□ -0.47
USP4-206ENST00000461553 NOX3Q9HBY0 568 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 DYNLRB1Q9NP97 96 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 ADAM21Q9UKJ8 722 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 FBXL3Q9UKT7 428 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 SH3GLB1Q9Y371 365 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 CAPN7Q9Y6W3 813 aa12.09□□□□□ -0.47
USP4-206ENST00000461553 COL6A5A8TX70 2615 aa12.08□□□□□ -0.47
USP4-206ENST00000461553 CUBNO60494 3623 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 FAM220BPB1ANY3 271 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 UBL3O95164 117 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 LYPD3O95274 346 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 ZNF16P17020 682 aaPredicted RBP12.08□□□□□ -0.48
USP4-206ENST00000461553 NPR2P20594 1047 aa12.08□□□□□ -0.48
USP4-206ENST00000461553 USF1P22415 310 aaPredicted RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms