RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TINAGQ9UJW2 476 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 NOSIPQ9Y314 301 aaKnown RBP16.07■□□□□ 0.16
SDC1-203ENST00000403076 FAM215AQ9Y5M1 114 aa16.07■□□□□ 0.16
SDC1-203ENST00000403076 IGKV3D-15A0A087WSY6 115 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 TRGV8A0A0C4DH27 118 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 ZNF724A8MTY0 619 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 E9PQ18 207 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 SURF4O15260 269 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 TLX2O43763 284 aaPredicted RBP16.06■□□□□ 0.16
SDC1-203ENST00000403076 SLC2A10O95528 541 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 GNAO1P09471 354 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 PCYT1AP49585 367 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 CAMK2DQ13557 499 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 MESTQ5EB52 335 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 ZNF691Q5VV52 312 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 CARD17Q5XLA6 110 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 NIPAL3Q6P499 406 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 LEG1Q6P5S2 330 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 NHLRC1Q6VVB1 395 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 C9orf106Q8NAJ2 232 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 SDR9C7Q8NEX9 313 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 INTS12Q96CB8 462 aaKnown RBP16.06■□□□□ 0.16
SDC1-203ENST00000403076 GMPPAQ96IJ6 420 aaPredicted RBP16.06■□□□□ 0.16
SDC1-203ENST00000403076 ADAD1Q96M93 576 aaKnown RBP16.06■□□□□ 0.16
SDC1-203ENST00000403076 RNF122Q9H9V4 155 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 RASSF1Q9NS23 344 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 PARPBPQ9NWS1 579 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 ING1Q9UK53 422 aaPredicted RBP16.06■□□□□ 0.16
SDC1-203ENST00000403076 GPR52Q9Y2T5 361 aa16.06■□□□□ 0.16
SDC1-203ENST00000403076 EIF4E1BA6NMX2 242 aaKnown RBP16.05■□□□□ 0.16
SDC1-203ENST00000403076 MRPL33O75394 65 aaKnown RBP16.05■□□□□ 0.16
SDC1-203ENST00000403076 RENP00797 406 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 IL2RAP01589 272 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 PRB1P04280 392 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 ACADSP16219 412 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 CLRN1P58418 232 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 ARMC4Q5T2S8 1044 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 GCNT2Q8N0V5 402 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 CYB561A3Q8NBI2 242 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 OR6X1Q8NH79 312 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 ZNF519Q8TB69 540 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 UBE2FQ969M7 185 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 SLC25A44Q96H78 314 aaPredicted RBP16.05■□□□□ 0.16
SDC1-203ENST00000403076 CNBD2Q96M20 576 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 NMNAT3Q96T66 252 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 BCO1Q9HAY6 547 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 GP6Q9HCN6 339 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 OSGIN2Q9Y236 505 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 RNF6Q9Y252 685 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 BSNQ9UPA5 3926 aa16.05■□□□□ 0.16
SDC1-203ENST00000403076 RP1L1Q8IWN7 2480 aaPredicted RBP16.05■□□□□ 0.16
SDC1-203ENST00000403076 MBD3L4A6NDZ8 208 aaPredicted RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 MBD3L3A6NE82 208 aaPredicted RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 MBD3L5A6NJ08 208 aaPredicted RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 H7C1C5 153 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 PRKYO43930 277 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 MPZL2O60487 215 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 IGHG1P01857 330 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 PAICSP22234 425 aaKnown RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 CDKN2AP42771 156 aaKnown RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 LCN6P62502 163 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 SIRPAP78324 504 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 CD47Q08722 323 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 USP51Q70EK9 711 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 ADCK1Q86TW2 530 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 CCDC71Q8IV32 467 aaPredicted RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 RPRMLQ8N4K4 120 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 SYT14Q8NB59 555 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 OR8J1Q8NGP2 316 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 MBD3L2Q8NHZ7 208 aaPredicted RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 TRUB1Q8WWH5 349 aaKnown RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 ZNF566Q969W8 418 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 TMEM45BQ96B21 275 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 ANKRD60Q9BZ19 345 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 RCE1Q9Y256 329 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 EMC9Q9Y3B6 208 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 LRRC42Q9Y546 428 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 SHANK1Q9Y566 2161 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 IGSF10Q6WRI0 2623 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 ALPK2Q86TB3 2170 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 PRR23D1E9PI22 279 aaPredicted RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 SLC43A1O75387 559 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 TRMUO75648 421 aaKnown RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 PRR23D2P0DMB1 279 aaPredicted RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 MYF6P23409 242 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 SELENOPP49908 381 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 TLE1Q04724 770 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 RUNX1T1Q06455 604 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 ITGADQ13349 1161 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 CRMP1Q14194 572 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 KRT80Q6KB66 452 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 CXXC5Q7LFL8 322 aaKnown RBP16.04■□□□□ 0.16
SDC1-203ENST00000403076 THAP5Q7Z6K1 395 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 CPOQ8IVL8 374 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 ZNF100Q8IYN0 542 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 ENTHD1Q8IYW4 607 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 CNEP1R1Q8N9A8 125 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 SLC37A3Q8NCC5 494 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 OR6N1Q8NGY5 312 aa16.04■□□□□ 0.16
SDC1-203ENST00000403076 TMEM163Q8TC26 289 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms