RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 MRPL22Q9NWU5 206 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 GAR1Q9NY12 217 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 H0YGG7 62 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF593O00488 134 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 PVRP15151 417 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CNR1P21554 472 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 FGF7P21781 194 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 VASPP50552 380 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 RPS18P62269 152 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 SEMA3BQ13214 749 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 STEAP1BQ6NZ63 245 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 RBMS3Q6XE24 437 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 FRMD1Q8N878 549 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 RBMXL1Q96E39 390 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 CDCA3Q99618 268 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 VN1R3Q9BXE9 311 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 PIGMQ9H3S5 423 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 WDR76Q9H967 626 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 BCO1Q9HAY6 547 aa9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 LYRM2Q9NU23 88 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 SPATA6Q9NWH7 488 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-203ENST00000396595 A0A0B4J2A0 478 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ZBTB42B2RXF5 422 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 HCCSP53701 268 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ISL1P61371 349 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 FOXK2Q01167 660 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 XKR7Q5GH72 579 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ZMAT1Q5H9K5 638 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 OR5L1Q8NGL2 311 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF296Q8WUU4 475 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 FAM3CQ92520 227 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 TMEM18Q96B42 140 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SHPKQ9UHJ6 478 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 FAM227AF5H4B4 570 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 TRAPPC2LH3BP13 241 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ZFAND5O76080 213 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 FOLR3P41439 243 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 LIMK1P53667 647 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC35A2P78381 396 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SRPXP78539 464 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 BDH1Q02338 343 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 TGFBR3Q03167 851 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 MMP21Q8N119 569 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 CLRN3Q8NCR9 226 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 OR9K2Q8NGE7 335 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 HHIPL1Q96JK4 782 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC25A21Q9BQT8 299 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 FAM103A1Q9BTL3 118 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 LIN7CQ9NUP9 197 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SERINC4A6NH21 518 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 TRIM77I1YAP6 450 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SOCS6O14544 535 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SIX6O95475 246 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 PIPP12273 146 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 PCP4P48539 62 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 CASP6P55212 293 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 TLE4Q04727 773 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ABLIM2Q6H8Q1 611 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 FBXW12Q6X9E4 464 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 OR13C9Q8NGT0 318 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC35B4Q969S0 331 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 MRPL38Q96DV4 380 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 UHRF2Q96PU4 802 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 PARD6AQ9NPB6 346 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 DNAJB11Q9UBS4 358 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 OSGIN2Q9Y236 505 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 MYH4Q9Y623 1939 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 TRABD2BA6NFA1 517 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 CEBPZOSA8MTT3 80 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 EDIL3O43854 480 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 CLEC2LP0C7M8 214 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 COX20Q5RI15 118 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SIGIRRQ6IA17 410 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 DPY19L2P2Q6ZN68 376 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SIGLECL1Q8N7X8 197 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 IL1F10Q8WWZ1 152 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 YIPF5Q969M3 257 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 MSI2Q96DH6 328 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 FOXN4Q96NZ1 517 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF251Q9BRH9 671 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ENKD1Q9H0I2 346 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 TMEM129A0AVI4 362 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 MPPED1O15442 326 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 LAMTOR5O43504 91 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 PAPLNO95428 1278 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 PMS2P2O95744 297 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 ELK1P19419 428 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 LAP3P28838 519 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 PMPCAQ10713 525 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 OXA1LQ15070 435 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 B3GLCTQ6Y288 498 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 C17orf107Q6ZR85 190 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 MOB3CQ70IA8 216 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 FAM57BQ71RH2 274 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 SEC22AQ96IW7 307 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 AMDHD1Q96NU7 426 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 AMBRA1Q9C0C7 1298 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 EPHX3Q9H6B9 360 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 CRLF2Q9HC73 371 aa9.49□□□□□ -0.89
LIMCH1-203ENST00000396595 RNF186Q9NXI6 227 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms