RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 NUS1Q96E22 293 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 KIRREL1Q96J84 757 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 WDR62O43379 1518 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 MCRIP1C9JLW8 97 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 CTDSP2O14595 271 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 IL2RGP31785 369 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 NKX2-1P43699 371 aaPredicted RBP8.14□□□□□ -1.11
LIG3-202ENST00000378526 SRSF9Q13242 221 aaKnown RBP eCLIP8.14□□□□□ -1.11
LIG3-202ENST00000378526 ADPRMQ3LIE5 342 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 LRRTM4Q86VH4 590 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 FUNDC1Q8IVP5 155 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 OR52N2Q8NGI0 321 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 C1QTNF2Q9BXJ5 285 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 NKX2-4Q9H2Z4 354 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 ZNF888P0CJ79 500 aaPredicted RBP8.14□□□□□ -1.11
LIG3-202ENST00000378526 CR2P20023 1033 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 PCBD1P61457 104 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 ARF6P62330 175 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 OR51A4Q8NGJ6 313 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 RPL3LQ92901 407 aaKnown RBP8.14□□□□□ -1.11
LIG3-202ENST00000378526 LHX4Q969G2 390 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 SYT17Q9BSW7 474 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 SLC25A18Q9H1K4 315 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 AKIRIN1Q9H9L7 192 aaPredicted RBP8.14□□□□□ -1.11
LIG3-202ENST00000378526 LHX3Q9UBR4 397 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 OR14J1Q9UGF5 321 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 RNF11Q9Y3C5 154 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 SPO11Q9Y5K1 396 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 TRDV1A0A1B0GX56 115 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 ATXN1LP0C7T5 689 aaKnown RBP8.14□□□□□ -1.11
LIG3-202ENST00000378526 ZNF30P17039 623 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 CTXN1P60606 82 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 PJVKQ0ZLH3 352 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 TMEM107Q6UX40 140 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 OR4K5Q8NGD3 323 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 OR6C3Q9NZP0 311 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 YIPF1Q9Y548 306 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 PTPRUQ92729 1446 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 C1orf226A1L170 272 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 NRP1O14786 923 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 IRAK2O43187 625 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 SNNO75324 88 aaPredicted RBP8.14□□□□□ -1.11
LIG3-202ENST00000378526 CORO1AP31146 461 aaKnown RBP8.14□□□□□ -1.11
LIG3-202ENST00000378526 TUSC1Q2TAM9 212 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 UNC50Q53HI1 259 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 LETMD1Q6P1Q0 360 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 TRILQ7L0X0 811 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 VRK2Q86Y07 508 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 CPOQ8IVL8 374 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 DNAJC19Q96DA6 116 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 FKBP11Q9NYL4 201 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 OR52A1Q9UKL2 312 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 A0A1W2PNV4 684 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 C2CD4BA6NLJ0 364 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 GNSP15586 552 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 TNFSF9P41273 254 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 C9orf152Q5JTZ5 239 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 KIAA0895LQ68EN5 471 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 ADGRE4PQ86SQ3 457 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 THNSL2Q86YJ6 484 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 STPG2Q8N412 459 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 CERS5Q8N5B7 392 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 LGALS14Q8TCE9 139 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 OR51M1Q9H341 326 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 SUV39H2Q9H5I1 410 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 ZNF337Q9Y3M9 751 aa8.14□□□□□ -1.11
LIG3-202ENST00000378526 FAM155AB1AL88 458 aaPredicted RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 SYT5O00445 386 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 ISLRO14498 428 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 RNGTTO60942 597 aaKnown RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 RABGGTBP53611 331 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 SNU13P55769 128 aaKnown RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 UBE2NP61088 152 aaKnown RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 OC90Q02509 493 aaPredicted RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 ZNF91Q05481 1191 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 ZNF385BQ569K4 471 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 PABPC1L2AQ5JQF8 200 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 LYSMD4Q5XG99 296 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 ZNF100Q8IYN0 542 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 NRSN1Q8IZ57 195 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 MMP21Q8N119 569 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 BARX1Q9HBU1 254 aaPredicted RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 CD207Q9UJ71 328 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 DUXBA0A1W2PPF3 345 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 CXorf49A8MYA2 514 aaPredicted RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 FCN1O00602 326 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 PTHP01270 115 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 DEFA4P12838 97 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 NPY1RP25929 384 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 APLNRP35414 380 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 ARRB1P49407 418 aaPredicted RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 OR8G2PQ6IF36 304 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 SLC26A10Q8NG04 563 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 SFRP2Q96HF1 295 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 CAPNS2Q96L46 248 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 GPR174Q9BXC1 333 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 OCEL1Q9H607 264 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 KCNMB3Q9NPA1 279 aa8.13□□□□□ -1.11
LIG3-202ENST00000378526 MAFBQ9Y5Q3 323 aaPredicted RBP8.13□□□□□ -1.11
LIG3-202ENST00000378526 TRIP12Q14669 1992 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms