RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SKP2Q13309 424 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 SLC35D3Q5M8T2 416 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 FNDC7Q5VTL7 733 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 INO80CQ6PI98 192 aaPredicted RBP14.08□□□□□ -0.16
CCDC40-202ENST00000374876 PAMR1Q6UXH9 720 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 IL20RBQ6UXL0 311 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 OR13C5Q8NGS8 318 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 OR2Y1Q8NGV0 311 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 OR6K6Q8NGW6 343 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 THAP4Q8WY91 577 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 TP53INP1Q96A56 240 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 RASD2Q96D21 266 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 SMIM19Q96E16 107 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 PELI1Q96FA3 418 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 MRPL48Q96GC5 212 aaKnown RBP14.08□□□□□ -0.16
CCDC40-202ENST00000374876 MESP1Q9BRJ9 268 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 NXF5Q9H1B4 397 aaKnown RBP14.08□□□□□ -0.16
CCDC40-202ENST00000374876 CYSLTR2Q9NS75 346 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 DDX28Q9NUL7 540 aaKnown RBP14.08□□□□□ -0.16
CCDC40-202ENST00000374876 GNG8Q9UK08 70 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 MRTO4Q9UKD2 239 aaKnown RBP14.08□□□□□ -0.16
CCDC40-202ENST00000374876 ITGB1BP2Q9UKP3 347 aa14.08□□□□□ -0.16
CCDC40-202ENST00000374876 A0A0G2JMP0 313 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 A0A0X1KG70 313 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 CDC14CA4D256 554 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 OR6C68A6NDL8 312 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 ZNF891A8MT65 544 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 OGG1O15527 345 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 ZNF264O43296 627 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 LYRM1O43325 122 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 OIP5O43482 229 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 THBS2P35442 1172 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 DDOSTP39656 456 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 FOLR3P41439 243 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 GDI2P50395 445 aaKnown RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 UCNP55089 124 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 SIRPAP78324 504 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 CDK5R1Q15078 307 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 TBRG1Q3YBR2 411 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 CDONQ4KMG0 1287 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 ATG4DQ86TL0 474 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 TEX19Q8NA77 164 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 OR4M2Q8NGB6 313 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 MOSPD2Q8NHP6 518 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 TSLPQ969D9 159 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 ZNF486Q96H40 463 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 OR1F2PQ96R84 312 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 WDR54Q9H977 334 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 EXOSC3Q9NQT5 275 aaKnown RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 NANSQ9NR45 359 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 RBMX2Q9Y388 322 aaKnown RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 PKD1L2Q7Z442 2459 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 MGAQ8IWI9 3026 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 IGLV3-12A0A075B6K2 115 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 FAM240BA0A1B0GVZ2 78 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 SELENOFO60613 162 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 EIF4EP06730 217 aaKnown RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 RAB3BP20337 219 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 OTX2P32243 289 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 EFNA3P52797 238 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 ZNF74Q16587 644 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 ZFP69Q49AA0 526 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 ZNF57Q68EA5 555 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 CBLN3Q6UW01 205 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 TRMT10AQ8TBZ6 339 aaKnown RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 UBASH3BQ8TF42 649 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 CAPSLQ8WWF8 208 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 ZC3HAV1LQ96H79 300 aaKnown RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 LCORQ96JN0 433 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 GAL3ST4Q96RP7 486 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 GPX7Q96SL4 187 aaPredicted RBP14.07□□□□□ -0.16
CCDC40-202ENST00000374876 HDHD2Q9H0R4 259 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 MKL2Q9ULH7 1088 aa14.07□□□□□ -0.16
CCDC40-202ENST00000374876 TRBV2A0A0J9YWF9 115 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 TEX13CA0A0J9YWL9 993 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 FRG2CA6NGY1 282 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 A8MV72 311 aaPredicted RBP14.06□□□□□ -0.16
CCDC40-202ENST00000374876 IGF2P01344 180 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 CD63P08962 238 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 AQP2P41181 271 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 SSPNQ14714 243 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 RPL22L1Q6P5R6 122 aaKnown RBP14.06□□□□□ -0.16
CCDC40-202ENST00000374876 LEG1Q6P5S2 330 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 APOOLQ6UXV4 268 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 JAZF1Q86VZ6 243 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 OR4M1Q8NGD0 313 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 ZNF563Q8TA94 476 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 ZPLD1Q8TCW7 415 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 ZNRF4Q8WWF5 429 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 ST6GAL2Q96JF0 529 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 ADOQ96SZ5 270 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 DDOQ99489 341 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 KCNJ15Q99712 375 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 NMNAT2Q9BZQ4 307 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 N6AMT1Q9Y5N5 214 aa14.06□□□□□ -0.16
CCDC40-202ENST00000374876 TRAV1-2A0A0B4J238 106 aa14.05□□□□□ -0.16
CCDC40-202ENST00000374876 A0A0G2JK05 382 aa14.05□□□□□ -0.16
CCDC40-202ENST00000374876 IMPA2O14732 288 aa14.05□□□□□ -0.16
CCDC40-202ENST00000374876 ARL6IP5O75915 188 aa14.05□□□□□ -0.16
CCDC40-202ENST00000374876 NPR2P20594 1047 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms