RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 TAS1R1Q7RTX1 841 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 SYT9Q86SS6 491 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 GRAMD2AQ8IUY3 354 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 CCDC71Q8IV32 467 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 TMED6Q8WW62 240 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 OPN1LWP04000 364 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 MFGE8Q08431 387 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 MEP1BQ16820 701 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 ZNF750Q32MQ0 723 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 TMEFF1Q8IYR6 380 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 OR11A1Q9GZK7 315 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 EFNA3P52797 238 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 KCNIP4Q6PIL6 250 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 KIAA0907Q7Z7F0 614 aaPredicted RBP18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 OR6M1Q8NGM8 313 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 SLC46A2Q9BY10 475 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 ULBP3Q9BZM4 244 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 OR10A5Q9H207 317 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 OR10A2Q9H208 303 aa18.05■□□□□ 0.48
CCDC88B-202ENST00000356786 LOC100289279A0A1B0GTE1 492 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 HBE1P02100 147 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 MSX1P28360 303 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 TAGLN2P37802 199 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 OR5M10Q6IEU7 315 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 ZNF100Q8IYN0 542 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 OR5D18Q8NGL1 313 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 PARP12Q9H0J9 701 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 HCFC1R1Q9NWW0 138 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 A0A0J9YY10 115 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 ZC3H12DA2A288 527 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 CSF2RAP15509 400 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 POLR2HP52434 150 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 TEX261Q6UWH6 196 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 KCNG3Q8TAE7 436 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 SGK3Q96BR1 496 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 RSPRY1Q96DX4 576 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 INSM2Q96T92 566 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 SPNS1Q9H2V7 528 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 PATZ1Q9HBE1 687 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 UFSP2Q9NUQ7 469 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 KPTNQ9Y664 436 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 U3KQ87 197 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 TMEM200CA6NKL6 621 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 ADAM10O14672 748 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 TK1P04183 234 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 MMP2P08253 660 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 ZDHHC11BP0C7U3 371 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 BLVRBP30043 206 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 UBE2IP63279 158 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 NINQ8N4C6 2090 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 IGLV3-10A0A075B6K4 115 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 CDC14CA4D256 554 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 TRIM77I1YAP6 450 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 OR2F2O95006 317 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 CD80P33681 288 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 SELENOVP59797 346 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 OR2F1Q13607 317 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 ANGPTL6Q8NI99 470 aa18.04■□□□□ 0.48
CCDC88B-202ENST00000356786 SULT2B1O00204 365 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 TPBGQ13641 420 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 NKG7Q16617 165 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 TCTN3Q6NUS6 607 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 OVCH1Q7RTY7 1134 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 OR9A4Q8NGU2 314 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 SLCO2B1O94956 709 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 P2RY2P41231 377 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 NPY4RP50391 375 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 MLC1Q15049 377 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 SLC36A2Q495M3 483 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 MN1Q10571 1320 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 ZNF264O43296 627 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 SELENOFO60613 162 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 OR13C7P0DN81 318 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 FAAP20Q6NZ36 180 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 TMEM231Q9H6L2 316 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 EMC9Q9Y3B6 208 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 LAMB1P07942 1786 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 CD14P08571 375 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 ZNF44P15621 663 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 DPY19L2P2Q6ZN68 376 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 OR2A14Q96R47 310 aa18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 MRPS28Q9Y2Q9 187 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-202ENST00000356786 LRIT2A6NDA9 550 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 PMP2P02689 132 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 EIF4EP06730 217 aaKnown RBP18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 TPOP07202 933 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 OR10A3P58181 314 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 TLE4Q04727 773 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 FAM57BQ71RH2 274 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 MCATQ8IVS2 390 aaKnown RBP18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 RAB39BQ96DA2 213 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 SLC25A32Q9H2D1 315 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 ZNF286AQ9HBT8 521 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 ARAP2Q8WZ64 1704 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 PLPP1O14494 284 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 OR7C1O76099 320 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 CHRM4P08173 479 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 CSNK1A1P48729 337 aa18.02■□□□□ 0.48
CCDC88B-202ENST00000356786 ERV3-1Q14264 604 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms