RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 ABHD4Q8TB40 342 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 ASIC5Q9NY37 505 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 GIMAP2Q9UG22 337 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 RBBP6Q7Z6E9 1792 aaKnown RBP12.37□□□□□ -0.43
COL6A3-202ENST00000347401 SOWAHBA6NEL2 793 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 DHRS4L2Q6PKH6 230 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 RPS27LQ71UM5 84 aaKnown RBP12.37□□□□□ -0.43
COL6A3-202ENST00000347401 TMPRSS9Q7Z410 1059 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 SEH1LQ96EE3 360 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 APIPQ96GX9 242 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 PCYT2Q99447 389 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 SOX7Q9BT81 388 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 SPNS1Q9H2V7 528 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 NGBQ9NPG2 151 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 SLC9B1P1A6NJY1 282 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 GLB1P16278 677 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 GABRR1P24046 479 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 ADIRFQ15847 76 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 PRR11Q96HE9 360 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-202ENST00000347401 PTGDR2Q9Y5Y4 395 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 CTDSP2O14595 271 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 COCHO43405 550 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 IL2RGP31785 369 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 CDK5Q00535 292 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 OR1Q1Q15612 314 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 PPP1R3BQ86XI6 285 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 ZNF680Q8NEM1 530 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 OR14A16Q8NHC5 309 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 SLC35D1Q9NTN3 355 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 KCNK6Q9Y257 313 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 WNK2Q9Y3S1 2297 aa12.37□□□□□ -0.43
COL6A3-202ENST00000347401 H0Y8G0 127 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 SULT2B1O00204 365 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 DVL1O14640 695 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 SPTA1P02549 2419 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 DVL1P1P54792 670 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-202ENST00000347401 CARD17Q5XLA6 110 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 POM121CA8CG34 1229 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 FAM166BA8MTA8 275 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 M0R3H8 397 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 HIST1H1TP22492 207 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-202ENST00000347401 NRLP54845 237 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 RAC1P63000 192 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 Q6ZRG5 221 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 ZNRF4Q8WWF5 429 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 A0A0B4J2A0 478 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 F5H5K5 113 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 ZNF85Q03923 595 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 DOC2BQ14184 412 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 SUMF1Q8NBK3 374 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 OR7D2Q96RA2 312 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 FAM173AQ9BQD7 235 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 SHPKQ9UHJ6 478 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 AKR1C1Q04828 323 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 FPGSQ05932 587 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 FAM69BQ5VUD6 431 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 CADM3Q8N126 398 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 CLEC1AQ8NC01 280 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 OR51I2Q9H344 312 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 SPHK2Q9NRA0 654 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 NDRG2Q9UN36 371 aaKnown RBP12.36□□□□□ -0.43
COL6A3-202ENST00000347401 A0A0J9YY10 115 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 MAN2B1O00754 1011 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 CA12O43570 354 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 LDB2O43679 373 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 PAPLNO95428 1278 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 PSMB6P28072 239 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 ZNF93P35789 620 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-202ENST00000347401 CLDN20P56880 219 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 TPPP2P59282 170 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 MR1Q95460 341 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 WDR81Q562E7 1941 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 EIF1BO60739 113 aaKnown RBP12.36□□□□□ -0.43
COL6A3-202ENST00000347401 GDI1P31150 447 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 WASP42768 502 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 SULT1A2P50226 295 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 AADACL3Q5VUY0 350 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 BPHLQ86WA6 291 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-202ENST00000347401 ACOT4Q8N9L9 421 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 FGF7P21781 194 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 MOGAT2Q3SYC2 334 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 RBMXL3Q8N7X1 1067 aaKnown RBP12.36□□□□□ -0.43
COL6A3-202ENST00000347401 DIO2Q92813 273 aa12.36□□□□□ -0.43
COL6A3-202ENST00000347401 OR6C68A6NDL8 312 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 ZNF140P52738 457 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-202ENST00000347401 ZNF280AP59817 542 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-202ENST00000347401 FBXO27Q8NI29 283 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 GHSRQ92847 366 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 C19orf43Q9BQ61 176 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 ELOVL3Q9HB03 270 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 DUSP22Q9NRW4 184 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 SLC23A2Q9UGH3 650 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 TMEM184BQ9Y519 407 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-202ENST00000347401 TRIOBPQ9H2D6 2365 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 OR8U8P0C7N1 319 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 SMIM6P0DI80 62 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 TMEM102Q8N9M5 508 aaPredicted RBP12.35□□□□□ -0.43
COL6A3-202ENST00000347401 FAM3DQ96BQ1 224 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 OR5B2Q96R09 309 aa12.35□□□□□ -0.43
COL6A3-202ENST00000347401 PLAGL1Q9UM63 463 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms