RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 POLR2EP19388 210 aaKnown RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 COX5AP20674 150 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 RFC4P35249 363 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 PTGDSP41222 190 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 TNNT2P45379 298 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CASP4P49662 377 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CAV2P51636 162 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CDH4P55283 916 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CSNK1G2P78368 415 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 TGM3Q08188 693 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 DMTNQ08495 405 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CAVIN4Q5BKX8 364 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 KLF17Q5JT82 389 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 C1orf146Q5VVC0 180 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 OR4F3Q6IEY1 312 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 C11orf71Q6IPW1 123 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 IL34Q6ZMJ4 242 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 KDM7AQ6ZMT4 941 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CCDC80Q76M96 950 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 FAM220AQ7Z4H9 259 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 ECHDC2Q86YB7 292 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 SCFD1Q8WVM8 642 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 ST8SIA1Q92185 356 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 RAPGEF5Q92565 580 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 ZNF75CPQ92670 426 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 EFHD2Q96C19 240 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 SEC22AQ96IW7 307 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 RPRD1AQ96P16 312 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 HIST1H4GQ99525 98 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CDX2Q99626 313 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CHRDL1Q9BU40 450 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 NUP58Q9BVL2 599 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 RAB34Q9BZG1 259 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 POLR2J2Q9GZM3 115 aaKnown RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 POLR2J3Q9H1A7 115 aaKnown RBP2.28□□□□□ -2.04
HMGB1-201ENST00000326004 NANOGQ9H9S0 305 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 MCCC2Q9HCC0 563 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 IL36GQ9NZH8 169 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 ADAM28Q9UKQ2 775 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 MEMO1Q9Y316 297 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 UGT2A1Q9Y4X1 527 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 CHD8Q9HCK8 2581 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 ARFGEF1Q9Y6D6 1849 aa2.28□□□□□ -2.04
HMGB1-201ENST00000326004 ITSN1Q15811 1721 aa2.28□□□□□ -2.05
HMGB1-201ENST00000326004 SPTBN5Q9NRC6 3674 aaKnown RBP2.28□□□□□ -2.05
HMGB1-201ENST00000326004 CACNA1BQ00975 2339 aa2.28□□□□□ -2.05
HMGB1-201ENST00000326004 KDM6AO15550 1401 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-201ENST00000326004 CASKIN1Q8WXD9 1431 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 SBF1O95248 1867 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 SH3TC1Q8TE82 1336 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 A0A075B6Q4 140 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 IGHV3OR16-13A0A075B7E8 117 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 A0A0G2JRQ6 117 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 GOLGA6L7A0A1B0GV03 622 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 A0A1B0GVL5 298 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 HEATR9A2RTY3 570 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 LRP5LA4QPB2 252 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 PSMB11A5LHX3 300 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 PINLYPA6NC86 204 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 BTBD17A6NE02 478 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF780AO75290 641 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-201ENST00000326004 SUPT7LO94864 414 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 AP2A1O95782 977 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 TSPAN12O95859 305 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 NDUFB10O96000 172 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 AGTP01019 485 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 ALOX5P09917 674 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 CCDC130P13994 396 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 POU2F1P14859 743 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 CD1BP29016 333 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 PRDX3P30048 256 aaKnown RBP2.27□□□□□ -2.05
HMGB1-201ENST00000326004 ANP32AP39687 249 aaKnown RBP2.27□□□□□ -2.05
HMGB1-201ENST00000326004 MAP3K8P41279 467 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 APOC4P55056 127 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 BIDP55957 195 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 NUP107P57740 925 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 ASPHQ12797 758 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 ARFRP1Q13795 201 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 ARHGAP19Q14CB8 494 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 SFT2D3Q587I9 215 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 CTSL3PQ5NE16 218 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 PDZK1Q5T2W1 519 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 SLC35F2Q8IXU6 374 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 OR1L4Q8NGR5 311 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 NEIL3Q8TAT5 605 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 CHCHD10Q8WYQ3 142 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-201ENST00000326004 DCUN1D4Q92564 292 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 UCN3Q969E3 161 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 CFAP53Q96M91 514 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 RBM14Q96PK6 669 aaKnown RBP2.27□□□□□ -2.05
HMGB1-201ENST00000326004 TBX15Q96SF7 602 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 LRRN3Q9H3W5 708 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 EXO5Q9H790 373 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 SLC25A22Q9H936 323 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 FOLH1BQ9HBA9 442 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 PLGRKTQ9HBL7 147 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 POPDC2Q9HBU9 364 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 POLE4Q9NR33 117 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 TREM2Q9NZC2 230 aa2.27□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF639Q9UID6 485 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms