RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 SIRPAP78324 504 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 CCL7P80098 99 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 S100A12P80511 92 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PRDX1Q06830 199 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PABPC1L2AQ5JQF8 200 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 TMEM255AQ5JRV8 349 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 METRNLQ641Q3 311 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 SFRP4Q6FHJ7 346 aaPredicted RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ARHGAP11AQ6P4F7 1023 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ABHD17CQ6PCB6 329 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 LRFN4Q6PJG9 635 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 GSG1LQ6UXU4 331 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 LINGO2Q7L985 606 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 SAMD14Q8IZD0 417 aaPredicted RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 CDK20Q8IZL9 346 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF671Q8TAW3 534 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 SMAP2Q8WU79 429 aaPredicted RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PMEPA1Q969W9 287 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 HAVCR1Q96D42 359 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ZG16BQ96DA0 208 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 MS4A6EQ96DS6 147 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 MRPS24Q96EL2 167 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 RBM18Q96H35 190 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 MS4A4EQ96PG1 132 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 OR10A4Q9H209 315 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 MED20Q9H944 212 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 CA10Q9NS85 328 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 FLVCR2Q9UPI3 526 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 KNTC1P50748 2209 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 A0A1W2PQM1 296 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 FEZF1A0PJY2 475 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 IFITM5A6NNB3 132 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 RHPN2P1A8MT19 583 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 H7BY64 318 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PPM1DO15297 605 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 LCMT2O60294 686 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 TOXO94900 526 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 NTN1O95631 604 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 AIFM1O95831 613 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 UBBP0CG47 229 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 UBCP0CG48 685 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PNLIPP16233 465 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PYCR1P32322 319 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 FAUP35544 74 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ACVR1BP36896 505 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PDX1P52945 283 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 GMFBP60983 142 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 STXBP1P61764 594 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 RPS27AP62979 156 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 UBA52P62987 128 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 SSBP1Q04837 148 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 DUSP2Q05923 314 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ETFDHQ16134 617 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 OR5M10Q6IEU7 315 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 MFSD12Q6NUT3 480 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 APOOLQ6UXV4 268 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PRSS45Q7RTY3 260 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 AMZ2Q86W34 360 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 OR2L5Q8NG80 312 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ADAMTS15Q8TE58 950 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PELI1Q96FA3 418 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 S100A16Q96FQ6 103 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 PRAP1Q96NZ9 151 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 TBX5Q99593 518 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 SEC22CQ9BRL7 303 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 RAB11FIP5Q9BXF6 653 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 DPH1Q9BZG8 443 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ALX4Q9H161 411 aaPredicted RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 EXOSC3Q9NQT5 275 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 ANKRD10Q9NXR5 420 aa9.42□□□□□ -0.9
UPF3B-201ENST00000276201 FBXO9Q9UK97 447 aaPredicted RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 MRPS7Q9Y2R9 242 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 TPRP12270 2363 aaKnown RBP9.42□□□□□ -0.9
UPF3B-201ENST00000276201 IGF2RP11717 2491 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 KIR2DS5A0A0G2JLQ3 304 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 A0A0G2JNG1 304 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 UBE2QL1A1L167 161 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ZC3H12DA2A288 527 aaKnown RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ANXA2P2A6NMY6 339 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 KIR2DS3K7RE56 304 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 DBIP07108 87 aaKnown RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 GUSBP08236 651 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 RBM34P42696 430 aaKnown RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 FASLGP48023 281 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 P2RX1P51575 399 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 OR1D5P58170 312 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 SRSF4Q08170 494 aaKnown RBP9.41□□□□□ -0.9
UPF3B-201ENST00000276201 CRMP1Q14194 572 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 KIR2DS5Q14953 304 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 SLC35D3Q5M8T2 416 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 SLC25A25Q6KCM7 469 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ZNF613Q6PF04 617 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 CCDC116Q8IYX3 515 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ACOT4Q8N9L9 421 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 ZFPM2Q8WW38 1151 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 MARC2Q969Z3 335 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 MIB2Q96AX9 1013 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 GFI1Q99684 422 aa9.41□□□□□ -0.9
UPF3B-201ENST00000276201 TAS2R8Q9NYW2 309 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms