RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RIMBP3Q9UFD9 1639 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 A6NL46 340 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 KDM4EB2RXH2 506 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CCL22O00626 93 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CCSO14618 274 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF728P0DKX0 622 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 HOXC13P31276 330 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 IHHQ14623 411 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 LY6KQ17RY6 165 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FUT10Q6P4F1 479 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 DPY19L2P2Q6ZN68 376 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 Q6ZTK2 550 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CAMKMTQ7Z624 323 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM104Q8NE00 496 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 RAB8BQ92930 207 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ADIPOR1Q96A54 375 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 UBL7Q96S82 380 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF331Q9NQX6 463 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PADI1Q9ULC6 663 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 RIMS1Q86UR5 1692 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 KIR2DS1A0A191URI9 304 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FIGNL2A6NMB9 653 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GFRA2O00451 464 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 HEXAP06865 529 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 KIR2DS4P43632 304 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 HTR6P50406 440 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 KIR2DS1Q14954 304 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GCNT2Q8N0V5 402 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 MSI2Q96DH6 328 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SDSLQ96GA7 329 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PRKAB1Q9Y478 270 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 MYH3P11055 1940 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 A0A1B0GTQ1 180 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 DUXBA0A1W2PPF3 345 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TCRBV5S1A1TA0A578 114 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CLDN5O00501 218 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FBXO24O75426 580 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SNRPBP14678 240 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ABOP16442 354 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ARNTP27540 789 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 RPL12P30050 165 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SGSHP51688 502 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 EMP2P54851 167 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GFOD2Q3B7J2 385 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 HFE2Q6ZVN8 426 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SAMD8Q96LT4 415 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM68Q96MH6 324 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SUCNR1Q9BXA5 334 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SLC39A9Q9NUM3 307 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 RHCGQ9UBD6 479 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 B3GALT5Q9Y2C3 310 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 DEDDO75618 318 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SERPINA7P05543 415 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 MRPL3P09001 348 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SPNP16150 400 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ACHEP22303 614 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TRHRP34981 398 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 MC1RQ01726 317 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PRSS54Q6PEW0 395 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TRAPPC6BQ86SZ2 158 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 LSRQ86X29 649 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 GRHL3Q8TE85 626 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 LINC00052Q96N35 136 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ARHGDIGQ99819 225 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 POFUT1Q9H488 388 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FBXL12Q9NXK8 326 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TMEFF2Q9UIK5 374 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM184BQ9Y519 407 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TIMM13Q9Y5L4 95 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CSAG2Q9Y5P2 127 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZFP37Q9Y6Q3 630 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 SERTM1A2A2V5 107 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 DBX1A6NMT0 343 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 PRR35P0CG20 571 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 NAA10P41227 235 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CAV3P56539 151 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 DHODHQ02127 395 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TAF10Q12962 218 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 LEMD1Q68G75 181 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 BRICD5Q6PL45 260 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 WDR74Q6RFH5 385 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 B3GNT9Q6UX72 402 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZFP41Q8N8Y5 198 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OR7D4Q8NG98 312 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 FBLIM1Q8WUP2 373 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF764Q96H86 408 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 ZNF681Q96N22 645 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 MS4A10Q96PG2 267 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CIB3Q96Q77 187 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 TMEM59Q9BXS4 323 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 VCX2Q9H322 139 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 BANF2Q9H503 90 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 C2orf42Q9NWW7 574 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CARHSP1Q9Y2V2 147 aaKnown RBP4.33□□□□□ -1.72
SCN1A-220ENST00000641603 MICAL3Q7RTP6 2002 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CXorf51AA0A1B0GTR3 108 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 A0A1W2PPV4 95 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 A6NDN8 102 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 OPN1LWP04000 364 aa4.33□□□□□ -1.72
SCN1A-220ENST00000641603 CASRP41180 1078 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms