RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ERVK13-1Q9NX77 482 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PLEKHB1Q9UF11 243 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GPR137BO60478 399 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PEX11AO75192 247 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR5AL1P0C617 328 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 MMP8P22894 467 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SSTR4P31391 388 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 NMUP48645 174 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 WNT7BP56706 349 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GPR85P60893 370 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 RPS13P62277 151 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ACSM1Q08AH1 577 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 NFATC2Q13469 925 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 DUSP6Q16828 381 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 KIAA1614Q5VZ46 1190 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 REEP3Q6NUK4 255 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FAM122BQ7Z309 247 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 VWA5B2Q8N398 1253 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PARP16Q8N5Y8 322 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 WDR89Q96FK6 387 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SENP5Q96HI0 755 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 HARBI1Q96MB7 349 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LPAR5Q9H1C0 372 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GSTO2Q9H4Y5 243 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 RHOFQ9HBH0 211 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ACKR4Q9NPB9 350 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ANKMY1Q9P2S6 941 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GAB2Q9UQC2 676 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 NOTCH1P46531 2555 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ROBO2Q9HCK4 1378 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 RGPD3A6NKT7 1758 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TRAPPC2LH3BP13 241 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 K7ERU9 68 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 INSIG1O15503 277 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 PRAF2O60831 178 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 HSBP1O75506 76 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 EN2P19622 333 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 NFYBP25208 207 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LAP3P28838 519 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CEACAM8P31997 349 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 IDUAP35475 653 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CD86P42081 329 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 HOXA1P49639 335 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF658BQ4V348 819 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM97Q5BJF2 176 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF585AQ6P3V2 769 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 AQP11Q8NBQ7 271 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM116Q8NCL8 245 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR7G3Q8NG95 312 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 NEIL3Q8TAT5 605 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 H1FXQ92522 213 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR4C12Q96R67 309 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM70Q9BUB7 260 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LRTM1Q9HBL6 345 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ING1Q9UK53 422 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 EXOSC1Q9Y3B2 195 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CPQQ9Y646 472 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LAMB2P55268 1798 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RIMS1Q86UR5 1692 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 M0R3H8 397 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 GAAP10253 952 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 FSTP19883 344 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF143P52747 638 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 BPIFB3P59826 476 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 DCDP81605 110 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 H3F3AP84243 136 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 BEX3Q00994 111 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 VGLL4Q14135 290 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RNF212Q495C1 297 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 GJB7Q6PEY0 223 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RFPL4BQ6ZWI9 263 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 KCNRGQ8N5I3 272 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 STT3BQ8TCJ2 826 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 NMNAT3Q96T66 252 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SMOQ99835 787 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 DPH1Q9BZG8 443 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TOLLIPQ9H0E2 274 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 COL6A5A8TX70 2615 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CD163L1Q9NR16 1453 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 MROH6A6NGR9 719 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 A6NIZ1 184 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SYNGR2O43760 224 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 DOK2O60496 412 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 STC2O76061 302 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CAPNS1P04632 268 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SERPINE2P07093 398 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ADRB1P08588 477 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF688P0C7X2 276 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TAGLN2P37802 199 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 IDH3AP50213 366 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ERVFC1P60507 584 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RAP1BP61224 184 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RHOBP62745 196 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RAP1AP62834 184 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 DSC2Q02487 901 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ERV3-1Q14264 604 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 KIAA1644Q3SXP7 199 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LAIR1Q6GTX8 287 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CEACAM19Q7Z692 300 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 THNSL2Q86YJ6 484 aa2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms