RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 PIF1Q9H611 641 aa6.87□□□□□ -1.31
CLK1-215ENST00000621181 SERINC1Q9NRX5 453 aa6.87□□□□□ -1.31
CLK1-215ENST00000621181 SLC6A13Q9NSD5 602 aa6.87□□□□□ -1.31
CLK1-215ENST00000621181 DNAJB9Q9UBS3 223 aa6.87□□□□□ -1.31
CLK1-215ENST00000621181 FAF1Q9UNN5 650 aaPredicted RBP6.87□□□□□ -1.31
CLK1-215ENST00000621181 NOSIPQ9Y314 301 aaKnown RBP6.87□□□□□ -1.31
CLK1-215ENST00000621181 SLC25A15Q9Y619 301 aa6.87□□□□□ -1.31
CLK1-215ENST00000621181 FKBP7Q9Y680 259 aa6.87□□□□□ -1.31
CLK1-215ENST00000621181 GMEB1Q9Y692 573 aa6.87□□□□□ -1.31
CLK1-215ENST00000621181 ATP23Q9Y6H3 246 aa6.87□□□□□ -1.31
CLK1-215ENST00000621181 SLC28A1O00337 649 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 ST8SIA5O15466 376 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 ZNF264O43296 627 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 CYP7B1O75881 506 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 TGFAP01135 160 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 HTR1AP08908 422 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 TFPIP10646 304 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 THRBP10828 461 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 UBL4AP11441 157 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 DDX5P17844 614 aaKnown RBP6.86□□□□□ -1.31
CLK1-215ENST00000621181 PRPH2P23942 346 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 CRHBPP24387 322 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 PDLIM4P50479 330 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 ATP12AP54707 1039 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 ESRRGP62508 458 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 RUNX1T1Q06455 604 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 PTGR1Q14914 329 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 CARTPTQ16568 116 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 IQCCQ4KMZ1 466 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 SYT14P1Q58G82 188 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 LRIF1Q5T3J3 769 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 Q6ZNX1 250 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 R3HCC1LQ7Z5L2 792 aaKnown RBP6.86□□□□□ -1.31
CLK1-215ENST00000621181 C10orf111Q8N326 155 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 TBC1D15Q8TC07 691 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 FNDC8Q8TC99 324 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 ADAMTS15Q8TE58 950 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 LZICQ8WZA0 190 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 ZNF524Q96C55 264 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 ZHX1-C8orf76Q96EF9 292 aa6.86□□□□□ -1.31
CLK1-215ENST00000621181 AURKBQ96GD4 344 aaPredicted RBP6.86□□□□□ -1.31
CLK1-215ENST00000621181 CPPED1Q9BRF8 314 aaPredicted RBP6.86□□□□□ -1.31
CLK1-215ENST00000621181 NAA50Q9GZZ1 169 aaKnown RBP6.86□□□□□ -1.31
CLK1-215ENST00000621181 PAIP1Q9H074 479 aaKnown RBP6.86□□□□□ -1.31
CLK1-215ENST00000621181 KAT8Q9H7Z6 458 aaKnown RBP6.86□□□□□ -1.31
CLK1-215ENST00000621181 SH3PXD2BA1X283 911 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 E9PQ18 207 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 NDUFS8O00217 210 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 EIF4E2O60573 245 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 TBX19O60806 448 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MRPL33O75394 65 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 IL6P05231 212 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 PGRP06401 933 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 BCKDHAP12694 445 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 CD247P20963 164 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MATN1P21941 496 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 APOBEC3AP31941 199 aaPredicted RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 NR4A2P43354 598 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 YAP1P46937 504 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 ENTPD1P49961 510 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 RPL38P63173 70 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 PDE7AQ13946 482 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MLC1Q15049 377 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 FAM174BQ3ZCQ3 159 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 SPDYE7PQ495Y7 208 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 FAM98BQ52LJ0 330 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 SLC25A53Q5H9E4 307 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 SPANXN4Q5MJ08 99 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 PDZK1Q5T2W1 519 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 C9orf135Q5VTT2 229 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 ABLIM2Q6H8Q1 611 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 TMPPEQ6ZT21 453 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 THAP5Q7Z6K1 395 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 TMEM179BQ7Z7N9 219 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 CROCCP3Q8IVE0 287 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 KRTCAP2Q8N6L1 136 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 OR2T12Q8NG77 320 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 SLC25A43Q8WUT9 341 aaPredicted RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 TMEM234Q8WY98 164 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 HDAC2Q92769 488 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 HPS1Q92902 700 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 FCRL1Q96LA6 429 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 ACTRT3Q9BYD9 372 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 QRSL1Q9H0R6 528 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 TOR3AQ9H497 397 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MAGIXQ9H6Y5 334 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 PLGRKTQ9HBL7 147 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 SIRT3Q9NTG7 399 aaPredicted RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 DCAF13Q9NV06 445 aaKnown RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 FAM118AQ9NWS6 357 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 MALT1Q9UDY8 824 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 TMEFF2Q9UIK5 374 aaPredicted RBP6.85□□□□□ -1.31
CLK1-215ENST00000621181 AP3M1Q9Y2T2 418 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 V9GYQ6 96 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 IGKV3D-15A0A087WSY6 115 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 A0A096LPI6 279 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 A0A1W2PPW3 197 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 FAM220BPB1ANY3 271 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 ATP6V1G2-DDX39BF2Z307 99 aa6.85□□□□□ -1.31
CLK1-215ENST00000621181 GPR171O14626 319 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms