RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 DVL2O14641 736 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 PPP1R2P9O14990 202 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 REM1O75628 298 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 RGS9O75916 674 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 SNRNP70P08621 437 aaKnown RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 IGFBP1P08833 259 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 ZNF888P0CJ79 500 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 LIMS3P0CW19 117 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 LIMS4P0CW20 117 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 ACP2P11117 423 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 PRPS1L1P21108 318 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 CCR4P51679 360 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 MESP2Q0VG99 397 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 ARSJQ5FYB0 599 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 SLC25A30Q5SVS4 291 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 TBC1D3GQ6DHY5 549 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 GRASPQ7Z6J2 395 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 CACUL1Q86Y37 369 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 HIST3H2BBQ8N257 126 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 NXPE1Q8N323 547 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 CBARPQ8N350 705 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 ZNF283Q8N7M2 679 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 NUBPLQ8TB37 319 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 DUSP19Q8WTR2 217 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 C5orf34Q96MH7 638 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 ZNF582Q96NG8 517 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 ATG10Q9H0Y0 220 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 GSX1Q9H4S2 264 aaPredicted RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 PLEKHA1Q9HB21 404 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 MRPS18AQ9NVS2 196 aaKnown RBP9.39□□□□□ -0.91
VPS39-214ENST00000614932 ARL15Q9NXU5 204 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 TVP23BQ9NYZ1 205 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 STARD10Q9Y365 291 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 PCDHB11Q9Y5F2 797 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 PLXNA4Q9HCM2 1894 aa9.39□□□□□ -0.91
VPS39-214ENST00000614932 CDRT15L2A8MXV6 281 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 NPIPB8E9PQR5 432 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 MFNGO00587 321 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 TP53I11O14683 189 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 GLCEO94923 617 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 NDUFB6O95139 128 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 ADAP00813 363 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 RLN1P04808 185 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 PRPS2P11908 318 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 IL2RGP31785 369 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 MAS1LP35410 378 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 CAV2P51636 162 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 METAP1P53582 386 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 ZNF805Q5CZA5 627 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 EOGTQ5NDL2 527 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 PGBD2Q6P3X8 592 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 ZNF621Q6ZSS3 439 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 Q6ZVL8 140 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 LILRA3Q8N6C8 439 aaPredicted RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 C12orf76Q8N812 135 aaPredicted RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 PIGXQ8TBF5 258 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 MRI1Q9BV20 369 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 TDP1Q9NUW8 608 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 SAGE1Q9NXZ1 904 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 TNFSF18Q9UNG2 199 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 PRUNE2Q8WUY3 3088 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 TMEM202A6NGA9 273 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 ZNF587BE7ETH6 402 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 F5H0A9 414 aaPredicted RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 MAN2B1O00754 1011 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 PCDH8O95206 1070 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 LRATO95237 230 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 RPLP1P05386 114 aaKnown RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 SERPIND1P05546 499 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 C1SP09871 688 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 VSIG10L2P0DP72 767 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 DGKAP23743 735 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 OR10A3P58181 314 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 TMEM115Q12893 351 aaPredicted RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 TSTA3Q13630 321 aaPredicted RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 TCEAL5Q5H9L2 206 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 FBXW9Q5XUX1 488 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 GLT8D1Q68CQ7 371 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 ZNF770Q6IQ21 691 aaPredicted RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 LILRA6Q6PI73 481 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 ACBD4Q8NC06 268 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 OR10R2Q8NGX6 335 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 RNASE8Q8TDE3 154 aaKnown RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 HSPA12BQ96MM6 686 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 PANX1Q96RD7 426 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 COPS8Q99627 209 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 SPHK2Q9NRA0 654 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 NUDT4Q9NZJ9 180 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 GPR55Q9Y2T6 319 aaPredicted RBP9.38□□□□□ -0.91
VPS39-214ENST00000614932 KPTNQ9Y664 436 aa9.38□□□□□ -0.91
VPS39-214ENST00000614932 ANKRD61A6NGH8 418 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 OR52A4PA6NMU1 304 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 MAGEB17A8MXT2 336 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 HYAL3O43820 417 aaPredicted RBP9.37□□□□□ -0.91
VPS39-214ENST00000614932 LEFTY1O75610 366 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 FOSL2P15408 326 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 RPIAP49247 311 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 ACSM1Q08AH1 577 aa9.37□□□□□ -0.91
VPS39-214ENST00000614932 CNTN1Q12860 1018 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms