RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ACTR1BP42025 376 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SLC1A3P43003 542 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 OR1E2P47887 323 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 MTNR1AP48039 350 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PITPNBP48739 271 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 HOXA1P49639 335 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 MMP15P51511 669 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 DLX5P56178 289 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TAS2R43P59537 309 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ACTR1AP61163 376 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 RAP2BP61225 183 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TSPAN5P62079 268 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 RAE1P78406 368 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 EFNB1P98172 346 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 CDK5Q00535 292 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 HSF1Q00613 529 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 IRF8Q02556 426 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 HHEXQ03014 270 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 CRYZQ08257 329 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 CHIT1Q13231 466 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 DDX39BQ13838 428 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 GK2Q14410 553 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 KRT33BQ14525 404 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 GANABQ14697 944 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 OPCMLQ14982 345 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ETFDHQ16134 617 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 GSG1Q2KHT4 349 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 LGALSLQ3ZCW2 172 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 ZNF385BQ569K4 471 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ENTPD8Q5MY95 495 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 COX20Q5RI15 118 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ARMC12Q5T9G4 340 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 METTL11BQ5VVY1 283 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 LIPNQ5VXI9 398 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ZDHHC20Q5W0Z9 365 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 OLFML2AQ68BL7 652 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 VASNQ6EMK4 673 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ADNP2Q6IQ32 1131 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 RGS7BPQ6MZT1 257 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 REEP3Q6NUK4 255 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SLC30A6Q6NXT4 461 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 C22orf39Q6P5X5 142 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PAQR6Q6TCH4 344 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ANGPTL8Q6UXH0 198 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 FAM151BQ6UXP7 276 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 LIPIQ6XZB0 460 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 MBOAT1Q6ZNC8 495 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TMEM91Q6ZNR0 172 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 FAM83HQ6ZRV2 1179 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 CHMP1BQ7LBR1 199 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SHFQ7M4L6 423 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TPRA1Q86W33 373 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 MEX3DQ86XN8 651 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 PLXDC1Q8IUK5 500 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 LRRC75A-AS1Q8N1F1 130 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 UBE2J2Q8N2K1 259 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 STPG2Q8N412 459 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 LINC00469Q8N7U9 141 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TCEANCQ8N8B7 351 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 BVESQ8NE79 360 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 OR6K2Q8NGY2 324 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 OR52J3Q8NH60 311 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 CDC26Q8NHZ8 85 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 TEX47Q8TBZ9 253 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SLC37A2Q8TED4 501 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 HSD17B8Q92506 261 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 RGMAQ96B86 450 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PPCDCQ96CD2 204 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 RBMXL1Q96E39 390 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 NEURL3Q96EH8 262 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 C1GALT1C1Q96EU7 318 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 GIMAP5Q96F15 307 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SENP5Q96HI0 755 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 LRR1Q96L50 414 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ZNF354BQ96LW1 612 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PRRC1Q96M27 445 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 COQ10AQ96MF6 247 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 CMTM3Q96MX0 182 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 DMRTA2Q96SC8 542 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 HIST1H2AJQ99878 128 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 VKORC1Q9BQB6 163 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 UTP23Q9BRU9 249 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 YIPF4Q9BSR8 244 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 H2AFJQ9BTM1 129 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 SARGQ9BW04 601 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 IFT27Q9BW83 186 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 POLR2J3Q9H1A7 115 aaKnown RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 SERHL2Q9H4I8 314 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ANKRD19PQ9H560 264 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ASB8Q9H765 288 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PLEKHF2Q9H8W4 249 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PLEKHA1Q9HB21 404 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 BPIFA1Q9NP55 256 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 INPP5EQ9NRR6 644 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 GPATCH2Q9NW75 528 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 PLA2G3Q9NZ20 509 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 KCMF1Q9P0J7 381 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 HCN3Q9P1Z3 774 aa3.78□□□□□ -1.8
LIG3-211ENST00000588713 ZNF624Q9P2J8 865 aaPredicted RBP3.78□□□□□ -1.8
LIG3-211ENST00000588713 RPS6KB2Q9UBS0 482 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms