RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 JOSD2Q8TAC2 188 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 STAG3L4Q8TBR4 150 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 RAPGEF5Q92565 580 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ABTB1Q969K4 478 aaPredicted RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 OMA1Q96E52 524 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 VSTM2LQ96N03 204 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ZNF285Q96NJ3 590 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 RASL10BQ96S79 203 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 AIF1LQ9BQI0 150 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 WRAP53Q9BUR4 548 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 NTMT1Q9BV86 223 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 FAIM2Q9BWQ8 316 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 GPR174Q9BXC1 333 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 DERL2Q9GZP9 239 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 UGT1A7Q9HAW7 530 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 CACYBPQ9HB71 228 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 LYRM4Q9HD34 91 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 C1RLQ9NZP8 487 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 GHRLQ9UBU3 117 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 FBXL3Q9UKT7 428 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ACOT9Q9Y305 439 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 DHRS7Q9Y394 339 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 MRPS18CQ9Y3D5 142 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 WDR87Q6ZQQ6 2873 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ZZEF1O43149 2961 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 NBPF19A0A087WUL8 3843 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ZCWPW2A0A1B0GU75 182 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TMEM89A2RUT3 159 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 SERINC4A6NH21 518 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 E5RI56 91 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 FOXE1O00358 373 aaPredicted RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 DYNC1I1O14576 645 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TM9SF1O15321 606 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 MID1O15344 667 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 SYNGR3O43761 229 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 CSO75390 466 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 STX11O75558 287 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TRMUO75648 421 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 OR4F21O95013 312 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 IGHV4-34P06331 123 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ZNF44P15621 663 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 CD1DP15813 335 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ATP5A1P25705 553 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 HMOX2P30519 316 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TIA1P31483 386 aaKnown RBP eCLIP1.69□□□□□ -2.149e-8■■■□□ 16.7
SMCHD1-211ENST00000584897 DRD3P35462 400 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ACTR1BP42025 376 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 MAGEA5P43359 124 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TMED10P49755 219 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 DNAJB13P59910 316 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ZFP36L1Q07352 338 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 LGALS3BPQ08380 585 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TRAF3Q13114 568 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 KCNJ11Q14654 390 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 IRF4Q15306 451 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 PHYHD1Q5SRE7 291 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 AGAP7PQ5VUJ5 663 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 CCDC137Q6PK04 289 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 CES3Q6UWW8 571 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 Q6ZSR6 202 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ASB18Q6ZVZ8 466 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 GOLGA7Q7Z5G4 137 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TMCO2Q7Z6W1 182 aaPredicted RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 YRDCQ86U90 279 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 VASH2Q86V25 355 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 SATL1Q86VE3 508 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 C1orf174Q8IYL3 243 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 FAM89BQ8N5H3 189 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 AMER3Q8N944 861 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 DEFB124Q8NES8 71 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 OR7G1Q8NGA0 311 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ACTL9Q8TC94 416 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 PHF10Q8WUB8 498 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 PIK3R3Q92569 461 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 FGF11Q92914 225 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 UCN3Q969E3 161 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 RERGQ96A58 199 aaPredicted RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 AGAP4Q96P64 663 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 MAP3K3Q99759 626 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TTYH2Q9BSA4 534 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 NEUROG2Q9H2A3 272 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 GAREM1Q9H706 876 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 NT5MQ9NPB1 228 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 B3GAT2Q9NPZ5 323 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 RPRD1BQ9NQG5 326 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 SDHAF3Q9NRP4 125 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 PNPLA3Q9NST1 481 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 SMPD3Q9NY59 655 aaPredicted RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 CNOT2Q9NZN8 540 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 TAAR2Q9P1P5 351 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 STX18Q9P2W9 335 aaKnown RBP1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ATG4BQ9Y4P1 393 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 BRWD1Q9NSI6 2320 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 ANK2Q01484 3957 aa1.69□□□□□ -2.14
SMCHD1-211ENST00000584897 GIMAP1-GIMAP5A0A087WTJ2 511 aa1.68□□□□□ -2.14
SMCHD1-211ENST00000584897 C1orf232A0A0U1RR37 186 aa1.68□□□□□ -2.14
SMCHD1-211ENST00000584897 A8MU76 341 aa1.68□□□□□ -2.14
SMCHD1-211ENST00000584897 SNURFLB1AK76 121 aa1.68□□□□□ -2.14
SMCHD1-211ENST00000584897 ZNF732B4DXR9 585 aa1.68□□□□□ -2.14
SMCHD1-211ENST00000584897 ARPC1BO15143 372 aaKnown RBP1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms