RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 AMDHD2Q9Y303 409 aa17.12■□□□□ 0.33
SS18-209ENST00000578595 FAM32AQ9Y421 112 aaKnown RBP17.12■□□□□ 0.33
SS18-209ENST00000578595 PRRC2AP48634 2157 aaKnown RBP17.12■□□□□ 0.33
SS18-209ENST00000578595 A0A096LPE4 126 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 A0A1W2PPZ6 126 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 SLC35F4A4IF30 521 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 MCIDASD6RGH6 385 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 PDLIM1O00151 329 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 OR7A10O76100 309 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 ATE1O95260 518 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 IFI30P13284 250 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 LOXP28300 417 aaPredicted RBP17.11■□□□□ 0.33
SS18-209ENST00000578595 BIDP55957 195 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 MELKQ14680 651 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 TRAM2Q15035 370 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 ACKR1Q16570 336 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 CEACAM16Q2WEN9 425 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 SLC46A3Q7Z3Q1 461 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 PXKQ7Z7A4 578 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 C17orf78Q8N4C9 275 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 KBTBD8Q8NFY9 601 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 BCAS4Q8TDM0 211 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 AKAP1Q92667 903 aaKnown RBP eCLIP17.11■□□□□ 0.33
SS18-209ENST00000578595 TXNDC15Q96J42 360 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 NSMCE2Q96MF7 247 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 MUS81Q96NY9 551 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 LINC00470Q9BZP3 86 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 SLC17A5Q9NRA2 495 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 C20orf141Q9NUB4 165 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 NPAP1Q9NZP6 1156 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 POU2F3Q9UKI9 436 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 SLC25A15Q9Y619 301 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 F8P00451 2351 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 OTOGQ6ZRI0 2925 aa17.11■□□□□ 0.33
SS18-209ENST00000578595 LOC102725191A0A1B0GVB3 256 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 hCG_2039718K7EN88 272 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 ABCD4O14678 606 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 SEC14L2O76054 403 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 WNT11O96014 354 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 SAGP10523 405 aaPredicted RBP17.1■□□□□ 0.33
SS18-209ENST00000578595 HSD17B1P14061 328 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 IFNGR1P15260 489 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 FUT1P19526 365 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 CAPZA2P47755 286 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 PRPS1P60891 318 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 FGD3Q5JSP0 725 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 TMEM108Q6UXF1 575 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 ZNF730Q6ZMV8 503 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 SLC35D2Q76EJ3 337 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 LINGO2Q7L985 606 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 RRM2BQ7LG56 351 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 OR1K1Q8NGR3 316 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 ULBP2Q9BZM5 246 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 CRLF2Q9HC73 371 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 GPR35Q9HC97 309 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 MAGED1Q9Y5V3 778 aaPredicted RBP17.1■□□□□ 0.33
SS18-209ENST00000578595 MED13LQ71F56 2210 aa17.1■□□□□ 0.33
SS18-209ENST00000578595 A0A1W2PRG6 482 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 DPRXA6NFQ7 191 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 HS3ST1O14792 307 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 ARPC2O15144 300 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 ZNF432O94892 652 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 ASAH2BP0C7U1 165 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 CSNK1A1P48729 337 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 SH3BGRP55822 239 aaPredicted RBP17.09■□□□□ 0.33
SS18-209ENST00000578595 ARF1P84077 181 aaKnown RBP17.09■□□□□ 0.33
SS18-209ENST00000578595 DEFB113Q30KQ7 82 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 TBRG1Q3YBR2 411 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 C20orf204Q6ZNR8 217 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 MEX3DQ86XN8 651 aaKnown RBP17.09■□□□□ 0.33
SS18-209ENST00000578595 TMEM123Q8N131 208 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 FAM86B1Q8N7N1 296 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 DCAF13Q9NV06 445 aaKnown RBP17.09■□□□□ 0.33
SS18-209ENST00000578595 FAM53CQ9NYF3 392 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 ENPP4Q9Y6X5 453 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 USF3Q68DE3 2245 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 ITPR3Q14573 2671 aa17.09■□□□□ 0.33
SS18-209ENST00000578595 F13BP05160 661 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 CD53P19397 219 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 CALB2P22676 271 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 CDH11P55287 796 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 TUBA1BP68363 451 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 TUBA4AP68366 448 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 RPL18Q07020 188 aaKnown RBP17.08■□□□□ 0.32
SS18-209ENST00000578595 SLC22A25Q6T423 547 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 SEZ6L2Q6UXD5 910 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 TUBA1AQ71U36 451 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 NRMQ8IXM6 262 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 NEUROG1Q92886 237 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 FBXW5Q969U6 566 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 MCUR1Q96AQ8 359 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 BPIFA2Q96DR5 249 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 TAS2R5Q9NYW4 299 aa17.08■□□□□ 0.32
SS18-209ENST00000578595 MAP1AP78559 2803 aaPredicted RBP17.08■□□□□ 0.32
SS18-209ENST00000578595 FFAR1O14842 300 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 SMPD2O60906 423 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 DIRAS1O95057 198 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 BCL10O95999 233 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 AQP2P41181 271 aa17.07■□□□□ 0.32
SS18-209ENST00000578595 SPOCK1Q08629 439 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms