RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 KLC3Q6P597 504 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 FITM2Q8N6M3 262 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 ZFP28Q8NHY6 868 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 C11orf40Q8WZ69 217 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 CIDECQ96AQ7 238 aaPredicted RBP13.44□□□□□ -0.26
VPS53-218ENST00000575207 ZG16BQ96DA0 208 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 EGLN1Q9GZT9 426 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 ZNF225Q9UK10 706 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 GPR45Q9Y5Y3 372 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 VAMP5O95183 116 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 DUS4LO95620 317 aaKnown RBP13.43□□□□□ -0.26
VPS53-218ENST00000575207 IGHV3-13P01766 116 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 ADH4P08319 380 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 THRBP10828 461 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 KIR2DS4P43632 304 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 GNB2P62879 340 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 PIGFQ07326 219 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 HNRNPA0Q13151 305 aaKnown RBP13.43□□□□□ -0.26
VPS53-218ENST00000575207 PDE7AQ13946 482 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 ADAMTSL5Q6ZMM2 481 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 CCDC91Q7Z6B0 441 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 NUDT16L1Q9BRJ7 211 aaKnown RBP13.43□□□□□ -0.26
VPS53-218ENST00000575207 ACTRT3Q9BYD9 372 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 TMEM106BQ9NUM4 274 aa13.43□□□□□ -0.26
VPS53-218ENST00000575207 TMED7-TICAM2A0A0A6YYA0 188 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 A0A0U1RQK1 487 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 CEACAM18A8MTB9 384 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 P2RY10O00398 339 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 SPRY3O43610 288 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 ANGPTL7O43827 346 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 GPIP06744 558 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 OR12D1P0DN82 309 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 RYKP34925 604 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 MMP15P51511 669 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 CDH13P55290 713 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 CEACAM7Q14002 265 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 GRTP1Q5TC63 336 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 LSRQ86X29 649 aaPredicted RBP13.42□□□□□ -0.26
VPS53-218ENST00000575207 ZNF283Q8N7M2 679 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 SPERTQ8NA61 448 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 RCC1LQ96I51 464 aaKnown RBP13.42□□□□□ -0.26
VPS53-218ENST00000575207 ZNF224Q9NZL3 707 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 KIF17Q9P2E2 1029 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 FBXL3Q9UKT7 428 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 TMED7Q9Y3B3 224 aa13.42□□□□□ -0.26
VPS53-218ENST00000575207 LIPT2A6NK58 231 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 KLHL2O95198 593 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 C2P06681 752 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 RPS17P08708 135 aaKnown RBP13.41□□□□□ -0.26
VPS53-218ENST00000575207 HTR3AP46098 478 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 GIPRP48546 466 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 MAP2K6P52564 334 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 ERVS71-1P61550 626 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 RAB1AP62820 205 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 SLC35A2P78381 396 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 OR7A5Q15622 319 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 SPDYAQ5MJ70 313 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 ZBTB37Q5TC79 503 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 NOXRED1Q6NXP6 359 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 C1orf122Q6ZSJ8 110 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 EIF3MQ7L2H7 374 aaKnown RBP13.41□□□□□ -0.26
VPS53-218ENST00000575207 ZNF584Q8IVC4 421 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 MUC20Q8N307 709 aaPredicted RBP13.41□□□□□ -0.26
VPS53-218ENST00000575207 GPR137CQ8N3F9 429 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 FAM71CQ8NEG0 241 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 ZNF483Q8TF39 744 aaPredicted RBP13.41□□□□□ -0.26
VPS53-218ENST00000575207 FAM120BQ96EK7 910 aaKnown RBP13.41□□□□□ -0.26
VPS53-218ENST00000575207 GPR78Q96P69 363 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 BAG1Q99933 345 aaPredicted RBP13.41□□□□□ -0.26
VPS53-218ENST00000575207 ZCCHC3Q9NUD5 404 aaKnown RBP13.41□□□□□ -0.26
VPS53-218ENST00000575207 KCNE5Q9UJ90 142 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 TMCO1Q9UM00 188 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 TRIM33Q9UPN9 1127 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 RCE1Q9Y256 329 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 KCNE3Q9Y6H6 103 aa13.41□□□□□ -0.26
VPS53-218ENST00000575207 TMEM72A0PK05 275 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 ZC3H12DA2A288 527 aaKnown RBP13.4□□□□□ -0.26
VPS53-218ENST00000575207 ANKRD61A6NGH8 418 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 FAM159BA6NKW6 160 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 FBXO24O75426 580 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 RAB36O95755 333 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 SERPINA5P05154 406 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 DRD4P21917 467 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 SSTR1P30872 391 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 HOXD3P31249 432 aaPredicted RBP13.4□□□□□ -0.26
VPS53-218ENST00000575207 CRHR1P34998 444 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 MDH2P40926 338 aaKnown RBP13.4□□□□□ -0.26
VPS53-218ENST00000575207 HTR6P50406 440 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 GLO1Q04760 184 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 ZNF141Q15928 474 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 SPRNQ5BIV9 151 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 ANKRD26P1Q6NSI1 321 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 ZNF627Q7L945 461 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 RNF130Q86XS8 419 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 CTAGE3PQ8IX95 158 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 DCAKDQ8WVC6 231 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 GEMIN6Q8WXD5 167 aaKnown RBP13.4□□□□□ -0.26
VPS53-218ENST00000575207 MS4A14Q96JA4 679 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 PCGF1Q9BSM1 259 aa13.4□□□□□ -0.26
VPS53-218ENST00000575207 IGHV1-69DA0A0B4J2H0 117 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms