RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SLC35A3Q9Y2D2 325 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 GMEB1Q9Y692 573 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 KCNE3Q9Y6H6 103 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 USH1CQ9Y6N9 552 aa9.49□□□□□ -0.89
VPS53-207ENST00000570510 WNK1Q9H4A3 2382 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 TMED7-TICAM2A0A0A6YYA0 188 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 PIN1P1O15428 100 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 CFLARO15519 480 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 SLC22A3O75751 556 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 AKR7A3O95154 331 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 KRT75O95678 551 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 C6orf47O95873 294 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 IGFBP1P08833 259 aaPredicted RBP9.48□□□□□ -0.89
VPS53-207ENST00000570510 NAT2P11245 290 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 EPHA3P29320 983 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 LSP1P33241 339 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 MTNR1AP48039 350 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 IDH2P48735 452 aaKnown RBP9.48□□□□□ -0.89
VPS53-207ENST00000570510 SELENOPP49908 381 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 ROR2Q01974 943 aaKnown RBP9.48□□□□□ -0.89
VPS53-207ENST00000570510 MAD2L1BPQ15013 274 aaPredicted RBP9.48□□□□□ -0.89
VPS53-207ENST00000570510 OR7A5Q15622 319 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 HSP90B2PQ58FF3 399 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 ATAD3BQ5T9A4 648 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 C16orf62Q7Z3J2 963 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 WDFY1Q8IWB7 410 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 CCDC36Q8IYA8 594 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 KRTCAP2Q8N6L1 136 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 SNX33Q8WV41 574 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 TAF15Q92804 592 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS53-207ENST00000570510 RAB1CQ92928 201 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 NEURL3Q96EH8 262 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 SDF2Q99470 211 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 GAL3ST1Q99999 423 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 TAPBPLQ9BX59 468 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 SERHL2Q9H4I8 314 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 PIF1Q9H611 641 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 DECR2Q9NUI1 292 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 PLEK2Q9NYT0 353 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 FZR1Q9UM11 496 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 TMED7Q9Y3B3 224 aa9.48□□□□□ -0.89
VPS53-207ENST00000570510 ISPDA4D126 451 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 CLDN25C9JDP6 229 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 POLR3GO15318 223 aaPredicted RBP9.47□□□□□ -0.89
VPS53-207ENST00000570510 DNAJA2O60884 412 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 IGHV2-5P01817 119 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 ALDOCP09972 364 aaKnown RBP9.47□□□□□ -0.89
VPS53-207ENST00000570510 CD79AP11912 226 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 IMPDH2P12268 514 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 POLR2HP52434 150 aaKnown RBP9.47□□□□□ -0.89
VPS53-207ENST00000570510 STX1BP61266 288 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 CCL8P80075 99 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 ARF1P84077 181 aaKnown RBP9.47□□□□□ -0.89
VPS53-207ENST00000570510 SRSF4Q08170 494 aaKnown RBP9.47□□□□□ -0.89
VPS53-207ENST00000570510 CEACAM7Q14002 265 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 GNA13Q14344 377 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 ZNF141Q15928 474 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 PGS1Q32NB8 556 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 ALKBH6Q3KRA9 238 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 MMEL1Q495T6 779 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 ZNF362Q5T0B9 420 aaPredicted RBP9.47□□□□□ -0.89
VPS53-207ENST00000570510 C16orf87Q6PH81 154 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 C6orf120Q7Z4R8 191 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 MDP1Q86V88 176 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 MYPOPQ86VE0 399 aaPredicted RBP9.47□□□□□ -0.89
VPS53-207ENST00000570510 MIER2Q8N344 545 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 GPR137CQ8N3F9 429 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 KIR3DL3Q8N743 410 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 TMEM99Q8N816 258 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 ZIC4Q8N9L1 334 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 OR5D16Q8NGK9 328 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 OR4F5Q8NH21 305 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 POP5Q969H6 163 aaKnown RBP9.47□□□□□ -0.89
VPS53-207ENST00000570510 OR7D2Q96RA2 312 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 RAD21L1Q9H4I0 556 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 TCF7L2Q9NQB0 619 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 ADPRHL2Q9NX46 363 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 UBAP1Q9NZ09 502 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 ZNF69Q9UC07 566 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 GIMAP2Q9UG22 337 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 OPN4Q9UHM6 478 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 TRIM33Q9UPN9 1127 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 AUP1Q9Y679 476 aa9.47□□□□□ -0.89
VPS53-207ENST00000570510 IGHV1-69-2A0A0G2JMI3 117 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 RNF103-CHMP3A0A140T963 221 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 TMEM72A0PK05 275 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 CLDN34H7C241 214 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 ZNF208O43345 1280 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 FCMRO60667 390 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 UPK3AO75631 287 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 RP2O75695 350 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 UGT2B17O75795 530 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 NCR1O76036 304 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 ZNF432O94892 652 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 VAMP5O95183 116 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 GPANK1O95872 356 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 UQCRBP14927 111 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 MATN1P21941 496 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 CXCR1P25024 350 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 SOAT1P35610 550 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms