RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 H3F3AP84243 136 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 HSF1Q00613 529 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 ZNF91Q05481 1191 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 PIGFQ07326 219 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 TMEM225Q6GV28 225 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 LEG1Q6P5S2 330 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 GPAT4Q86UL3 456 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 GGHQ92820 318 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 MRPS26Q9BYN8 205 aaKnown RBP27.35■■□□□ 1.97
CTCF-203ENST00000566078 DUSP21Q9H596 190 aa27.35■■□□□ 1.97
CTCF-203ENST00000566078 H2AFY2Q9P0M6 372 aaPredicted RBP27.35■■□□□ 1.97
CTCF-203ENST00000566078 RPL36Q9Y3U8 105 aaKnown RBP27.35■■□□□ 1.97
CTCF-203ENST00000566078 SNTNA6NMZ2 147 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 CLCA1A8K7I4 914 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 NPIPA5E9PKD4 350 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 RAMP1O60894 148 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 ACTL6AO96019 429 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 DBTP11182 482 aaKnown RBP27.34■■□□□ 1.97
CTCF-203ENST00000566078 ACVR1BP36896 505 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 APOFQ13790 326 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 NIPAL3Q6P499 406 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 ASB18Q6ZVZ8 466 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 GID4Q8IVV7 300 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 UEVLDQ8IX04 471 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 MEIOBQ8N635 442 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 NPEPL1Q8NDH3 523 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 ZNF519Q8TB69 540 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 ZPLD1Q8TCW7 415 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 IPCEF1Q8WWN9 437 aaPredicted RBP27.34■■□□□ 1.97
CTCF-203ENST00000566078 RFKQ969G6 155 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 UCN2Q96RP3 112 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 NPIPA1Q9UND3 350 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 LHX6Q9UPM6 363 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 NOX1Q9Y5S8 564 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 A0A087WXM4 84 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 CDKN2AP42771 156 aaKnown RBP27.34■■□□□ 1.97
CTCF-203ENST00000566078 DAP3P51398 398 aaKnown RBP27.34■■□□□ 1.97
CTCF-203ENST00000566078 SRYQ05066 204 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 ZNF773Q6PK81 442 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 SLC35D2Q76EJ3 337 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 ARIH2OSQ8N7S6 290 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 TAAR6Q96RI8 345 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 COPS4Q9BT78 406 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 ERVK-18Q9QC07 812 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP27.34■■□□□ 1.97
CTCF-203ENST00000566078 RASD1Q9Y272 281 aa27.34■■□□□ 1.97
CTCF-203ENST00000566078 ATMQ13315 3056 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 H7C1C5 153 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 XKRYO14609 159 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 IFNGR1P15260 489 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 AGFG1P52594 562 aaKnown RBP27.33■■□□□ 1.97
CTCF-203ENST00000566078 LCN6P62502 163 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 VASNQ6EMK4 673 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 OR9Q1Q8NGQ5 310 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 ASB10Q8WXI3 467 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 PTP4A1Q93096 173 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 OXGR1Q96P68 337 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 CCNB1IP1Q9NPC3 277 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 TIGARQ9NQ88 270 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 FKBP14Q9NWM8 211 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 KLHL13Q9P2N7 655 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 SPRR3Q9UBC9 169 aa27.33■■□□□ 1.97
CTCF-203ENST00000566078 ALPK2Q86TB3 2170 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 OR6C68A6NDL8 312 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 NPIPB13A6NJU9 1138 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 NPIPB4C9JG80 1138 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 IGHG3P01860 377 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 HTR1AP08908 422 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 ENPP1P22413 925 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 DBPQ10586 325 aaPredicted RBP27.32■■□□□ 1.96
CTCF-203ENST00000566078 KLHL12Q53G59 568 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 MED29Q9NX70 200 aa27.32■■□□□ 1.96
CTCF-203ENST00000566078 EFCAB10A6NFE3 127 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 M0R3G1 203 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 SMAD9O15198 467 aaKnown RBP27.31■■□□□ 1.96
CTCF-203ENST00000566078 ARHGEF9O43307 516 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 FAM87AP0C7U9 286 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 CLUP10909 449 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 SLC15A1P46059 708 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 C1DQ13901 141 aaKnown RBP27.31■■□□□ 1.96
CTCF-203ENST00000566078 BCL2A1Q16548 175 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 PLEKHN1Q494U1 663 aaPredicted RBP27.31■■□□□ 1.96
CTCF-203ENST00000566078 ARMC4Q5T2S8 1044 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 RPUSD3Q6P087 351 aaKnown RBP27.31■■□□□ 1.96
CTCF-203ENST00000566078 ADCK1Q86TW2 530 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 ZNF845Q96IR2 970 aaPredicted RBP27.31■■□□□ 1.96
CTCF-203ENST00000566078 DDOQ99489 341 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 CCDC90BQ9GZT6 254 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 OR51V1Q9H2C8 321 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 ZNF71Q9NQZ8 489 aaPredicted RBP27.31■■□□□ 1.96
CTCF-203ENST00000566078 CNOT2Q9NZN8 540 aaKnown RBP27.31■■□□□ 1.96
CTCF-203ENST00000566078 TNFRSF10DQ9UBN6 386 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 BOD1L1Q8NFC6 3051 aa27.31■■□□□ 1.96
CTCF-203ENST00000566078 PRRC2CQ9Y520 2896 aaKnown RBP27.31■■□□□ 1.96
CTCF-203ENST00000566078 RGS10O43665 173 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 BCL10O95999 233 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 GYPBP06028 91 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 HTR1FP30939 366 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 BLMHQ13867 455 aa27.3■■□□□ 1.96
CTCF-203ENST00000566078 INAQ16352 499 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms