RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SORDQ00796 357 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 POU3F1Q03052 451 aaPredicted RBP15.25■□□□□ 0.03
CLN3-217ENST00000565354 FAM27E3Q08E93 113 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 NIPAL3Q6P499 406 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 MBOAT2Q6ZWT7 520 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 CREB3L2Q70SY1 520 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 TSEN54Q7Z6J9 526 aaKnown RBP15.25■□□□□ 0.03
CLN3-217ENST00000565354 AQP12AQ8IXF9 295 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 TMEM45BQ96B21 275 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 BPIFA2Q96DR5 249 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 ZNF385AQ96PM9 386 aaKnown RBP15.25■□□□□ 0.03
CLN3-217ENST00000565354 MDFIQ99750 246 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 C20orf141Q9NUB4 165 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 TMCC3Q9ULS5 477 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 POMPQ9Y244 141 aa15.25■□□□□ 0.03
CLN3-217ENST00000565354 STAB1Q9NY15 2570 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 A0A087WUU8 490 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 A0A1W2PRQ8 180 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 TUBAL3A6NHL2 446 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 C16orf97H3BN30 126 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 PLPP3O14495 311 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 CIB2O75838 187 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 ADAP00813 363 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 IGHV3-9P01782 118 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 HEXAP06865 529 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 DGCR6Q14129 220 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 KEAP1Q14145 624 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 DAZAP2Q15038 168 aaPredicted RBP15.24■□□□□ 0.03
CLN3-217ENST00000565354 PODNL1Q6PEZ8 512 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 SLC46A3Q7Z3Q1 461 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 LRRC17Q8N6Y2 441 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 RSRC1Q96IZ7 334 aaKnown RBP15.24■□□□□ 0.03
CLN3-217ENST00000565354 NDRG3Q9UGV2 375 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 SLC7A8Q9UHI5 535 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 TMEM5Q9Y2B1 443 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 NOX1Q9Y5S8 564 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 ARID1AO14497 2285 aa15.24■□□□□ 0.03
CLN3-217ENST00000565354 ZANQ9Y493 2812 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 DHRS12A0PJE2 317 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 EFCAB9A8MZ26 197 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 MS4A18H0YCH9 400 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 ASAH2BP0C7U1 165 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 RAP2AP10114 183 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 FUT4P22083 530 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 IL32P24001 234 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 PRKCDQ05655 676 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 MS4A18Q3C1V0 323 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 C1orf146Q5VVC0 180 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 FBXW9Q5XUX1 488 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 TBPL2Q6SJ96 375 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 Q6ZT83 130 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 PIWIL3Q7Z3Z3 882 aaKnown RBP15.23■□□□□ 0.03
CLN3-217ENST00000565354 CXorf67Q86X51 503 aaPredicted RBP15.23■□□□□ 0.03
CLN3-217ENST00000565354 PRIMA1Q86XR5 153 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 EPHX4Q8IUS5 362 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 ANKK1Q8NFD2 765 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 SLC7A13Q8TCU3 470 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 SLCO5A1Q9H2Y9 848 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 ASB6Q9NWX5 421 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.23■□□□□ 0.03
CLN3-217ENST00000565354 B3GAT1Q9P2W7 334 aa15.23■□□□□ 0.03
CLN3-217ENST00000565354 HIVEP2P31629 2446 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 TRBV4-1A0A0J9YWV2 114 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 LOC102725191A0A1B0GVB3 256 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 OR6C65A6NJZ3 312 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 ZNF726A6NNF4 738 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 KIAA1324LA8MWY0 1029 aaPredicted RBP15.22■□□□□ 0.03
CLN3-217ENST00000565354 SLC43A1O75387 559 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 CNOT4O95628 575 aaKnown RBP15.22■□□□□ 0.03
CLN3-217ENST00000565354 HPRP00739 348 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 HOXB6P17509 224 aaKnown RBP15.22■□□□□ 0.03
CLN3-217ENST00000565354 UGT2B10P36537 528 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 GPR4P46093 362 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 SELENOPP49908 381 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 ERFP50548 548 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 FAPQ12884 760 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 TAF11Q15544 211 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 FBXW10Q5XX13 1052 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 ABHD12BQ7Z5M8 362 aaPredicted RBP15.22■□□□□ 0.03
CLN3-217ENST00000565354 PXKQ7Z7A4 578 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 MEX3DQ86XN8 651 aaKnown RBP15.22■□□□□ 0.03
CLN3-217ENST00000565354 ZIC4Q8N9L1 334 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 POMGNT2Q8NAT1 580 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 LINC01560Q8TB33 94 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 KISS1RQ969F8 398 aaPredicted RBP15.22■□□□□ 0.03
CLN3-217ENST00000565354 DHRS1Q96LJ7 313 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 MED18Q9BUE0 208 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 HDHD5Q9BXW7 423 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 NDEL1Q9GZM8 345 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 YY1AP1Q9H869 796 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 RCE1Q9Y256 329 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 GPR52Q9Y2T5 361 aa15.22■□□□□ 0.03
CLN3-217ENST00000565354 A0A1W2PRG6 482 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 CIB4A0PJX0 185 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 FAM171A2A8MVW0 826 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 MCIDASD6RGH6 385 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 TNFRSF11BO00300 401 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 GNGT2O14610 69 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 CASKO14936 926 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 TRAF3IP2O43734 574 aaPredicted RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms