RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 GPR137CQ8N3F9 429 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 SCAIQ8N9R8 606 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 PIK3C3Q8NEB9 887 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 ANKK1Q8NFD2 765 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 OR10A6Q8NH74 314 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 NANOS1Q8WY41 292 aaKnown RBP9.41□□□□□ -0.9
VPS39-208ENST00000564994 TAMM41Q96BW9 452 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 FBXO17Q96EF6 278 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 EPYCQ99645 322 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 SIKE1Q9BRV8 207 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 RHNO1Q9BSD3 238 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 KATNB1Q9BVA0 655 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 TMEM120AQ9BXJ8 343 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 EVA1AQ9H8M9 152 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 MED29Q9NX70 200 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 MRPL39Q9NYK5 338 aaKnown RBP9.41□□□□□ -0.9
VPS39-208ENST00000564994 SELENONQ9NZV5 590 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 CORINQ9Y5Q5 1042 aa9.41□□□□□ -0.9
VPS39-208ENST00000564994 SLC35F4A4IF30 521 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CPSF4LA6NMK7 179 aaKnown RBP9.4□□□□□ -0.9
VPS39-208ENST00000564994 ZNF99A8MXY4 864 aaPredicted RBP9.4□□□□□ -0.9
VPS39-208ENST00000564994 M0R3G1 203 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 FXYD1O00168 92 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 PLPP3O14495 311 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CHP2O43745 196 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CD5LO43866 347 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CRLF1O75462 422 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CRYAAP02489 173 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 C8BP07358 591 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CBR1P16152 277 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 PAX7P23759 505 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 PCGF2P35227 344 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 POU3F1Q03052 451 aaPredicted RBP9.4□□□□□ -0.9
VPS39-208ENST00000564994 HGFACQ04756 655 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CHRNB3Q05901 458 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 PUDPQ08623 228 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 SF3A3Q12874 501 aaKnown RBP eCLIP9.4□□□□□ -0.9
VPS39-208ENST00000564994 PMS2P3Q13401 168 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 ADIPOQQ15848 244 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 VMACQ2NL98 169 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 TRMT5Q32P41 509 aaKnown RBP9.4□□□□□ -0.9
VPS39-208ENST00000564994 C3orf36Q3SXR2 165 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 RABL3Q5HYI8 236 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CARD17Q5XLA6 110 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 NANOGP8Q6NSW7 305 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CGB2Q6NT52 195 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CLEC2AQ6UVW9 174 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 C20orf196Q8IYI0 205 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 FAM169BQ8N8A8 192 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 VANGL1Q8TAA9 524 aaPredicted RBP9.4□□□□□ -0.9
VPS39-208ENST00000564994 ADAMTS16Q8TE57 1224 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 ASPNQ9BXN1 380 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 NANOGQ9H9S0 305 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 CA10Q9NS85 328 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 USP22Q9UPT9 525 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 PMF1-BGLAPU3KQ54 211 aa9.4□□□□□ -0.9
VPS39-208ENST00000564994 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.39□□□□□ -0.91
VPS39-208ENST00000564994 AKAP8O43823 692 aaKnown RBP9.39□□□□□ -0.91
VPS39-208ENST00000564994 F12P00748 615 aaPredicted RBP9.39□□□□□ -0.91
VPS39-208ENST00000564994 SERPINF1P36955 418 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 IDH3GP51553 393 aaPredicted RBP9.39□□□□□ -0.91
VPS39-208ENST00000564994 EFNA4P52798 201 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 DSCR9P59020 149 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 CAMK2DQ13557 499 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 ZNF74Q16587 644 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 VHLLQ6RSH7 139 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 CCDC80Q76M96 950 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 PXKQ7Z7A4 578 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 PATL1Q86TB9 770 aaKnown RBP9.39□□□□□ -0.91
VPS39-208ENST00000564994 MDP1Q86V88 176 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 CALHM3Q86XJ0 350 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 SLC30A8Q8IWU4 369 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 C10orf53Q8N6V4 93 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 LRRC17Q8N6Y2 441 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 OR5J2Q8NH18 312 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 C10orf105Q8TEF2 133 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 LRRC58Q96CX6 371 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 LRR1Q96L50 414 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 SORCS2Q96PQ0 1159 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 KCNS3Q9BQ31 491 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 PRSS27Q9BQR3 290 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 ZNF426Q9BUY5 554 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 PCDHAC1Q9H158 963 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 NOX3Q9HBY0 568 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 FGFR1OP2Q9NVK5 253 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 ZNF446Q9NWS9 450 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 B3GNT2Q9NY97 397 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 SLC7A7Q9UM01 511 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 NOX1Q9Y5S8 564 aa9.39□□□□□ -0.91
VPS39-208ENST00000564994 IGHV2OR16-5A0A0B4J2B6 119 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 TRAPPC13A5PLN9 417 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 C11orf98E9PRG8 122 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 KPNA4O00629 521 aaPredicted RBP9.38□□□□□ -0.91
VPS39-208ENST00000564994 TLX2O43763 284 aaPredicted RBP9.38□□□□□ -0.91
VPS39-208ENST00000564994 SERPINI2O75830 405 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 CH25HO95992 272 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 MT-ATP6P00846 226 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 HLA-HP01893 362 aa9.38□□□□□ -0.91
VPS39-208ENST00000564994 TP53P04637 393 aaPredicted RBP9.38□□□□□ -0.91
VPS39-208ENST00000564994 OR4A8P0C604 315 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms