RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 B3GLCTQ6Y288 498 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 SLC37A3Q8NCC5 494 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 ANKK1Q8NFD2 765 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 OR2V1Q8NHB1 315 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 ROBO4Q8WZ75 1007 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 HDAC2Q92769 488 aaKnown RBP9.13□□□□□ -0.95
SRP54-208ENST00000555557 PTP4A1Q93096 173 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 TIMP4Q99727 224 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 PRRG3Q9BZD7 231 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 FN3KQ9H479 309 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 PAK1IP1Q9NWT1 392 aaPredicted RBP9.13□□□□□ -0.95
SRP54-208ENST00000555557 CLN6Q9NWW5 311 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 MED29Q9NX70 200 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 BAIAP2Q9UQB8 552 aa9.13□□□□□ -0.95
SRP54-208ENST00000555557 MAGEA13PA6NCF6 341 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 AQP7P3A6NL99 342 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 RIIAD1A6NNX1 92 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 FZD7O75084 574 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 TNFAIP8O95379 198 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 GYPBP06028 91 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 IFNGR1P15260 489 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 ZNF708P17019 499 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 SDHAP31040 664 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 RAC3P60763 192 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 RUNX1T1Q06455 604 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 MESTQ5EB52 335 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 ARHGAP11AQ6P4F7 1023 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 C19orf48Q6RUI8 117 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 CXXC5Q7LFL8 322 aaKnown RBP9.12□□□□□ -0.95
SRP54-208ENST00000555557 SIAH3Q8IW03 269 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 SLC43A2Q8N370 569 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 KDF1Q8NAX2 398 aaPredicted RBP9.12□□□□□ -0.95
SRP54-208ENST00000555557 NPEPL1Q8NDH3 523 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 C9orf43Q8TAL5 461 aaPredicted RBP9.12□□□□□ -0.95
SRP54-208ENST00000555557 ZNF775Q96BV0 537 aaPredicted RBP9.12□□□□□ -0.95
SRP54-208ENST00000555557 ZNF582Q96NG8 517 aaPredicted RBP9.12□□□□□ -0.95
SRP54-208ENST00000555557 EMC6Q9BV81 110 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 ZMIZ1Q9ULJ6 1067 aa9.12□□□□□ -0.95
SRP54-208ENST00000555557 DSPP15924 2871 aaKnown RBP9.12□□□□□ -0.95
SRP54-208ENST00000555557 A0A1W2PRG6 482 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 OR6C68A6NDL8 312 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 SMAD9O15198 467 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 ARHGEF9O43307 516 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 FAM20BO75063 409 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 IGHG3P01860 377 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ZNF3P17036 446 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 EEF1B2P24534 225 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 ACVR2AP27037 513 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ACVR1BP36896 505 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 AGFG1P52594 562 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 RPL27P61353 136 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 OCLNQ16625 522 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 RBM48Q5RL73 367 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 AADACL4Q5VUY2 407 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 LEG1Q6P5S2 330 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 SLC35D2Q76EJ3 337 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 PXKQ7Z7A4 578 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 EXD3Q8N9H8 876 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ZNF540Q8NDQ6 660 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 OR9Q1Q8NGQ5 310 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ZNRF4Q8WWF5 429 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 GGHQ92820 318 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 WDYHV1Q96HA8 205 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 TSSK2Q96PF2 358 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 OR51V1Q9H2C8 321 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 TXNIPQ9H3M7 391 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 PRRC2CQ9Y520 2896 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 A0A1W2PNV4 684 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 FAM171A2A8MVW0 826 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 PRR23D1E9PI22 279 aaPredicted RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 NPIPA2E9PIF3 369 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 NPIPA3F8WFD2 350 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 IDH3BO43837 385 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 EIF1BO60739 113 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 APOL3O95236 402 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 TXNDC12O95881 172 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 BCL10O95999 233 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ACTL6AO96019 429 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 IFNGP01579 166 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 PRR23D2P0DMB1 279 aaPredicted RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 APEHP13798 732 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 ZNF43P17038 809 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 CXCR4P61073 352 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 MVKQ03426 396 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 KRR1Q13601 381 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 C1DQ13901 141 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 KLHL12Q53G59 568 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 TMEM201Q5SNT2 666 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 SLC25A30Q5SVS4 291 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ARMC4Q5T2S8 1044 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 RPUSD3Q6P087 351 aaKnown RBP9.11□□□□□ -0.95
SRP54-208ENST00000555557 NHLRC1Q6VVB1 395 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 JAZF1Q86VZ6 243 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 UEVLDQ8IX04 471 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 MEIOBQ8N635 442 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ARIH2OSQ8N7S6 290 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 Q8NA96 180 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ADPRHL1Q8NDY3 354 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 OR51L1Q8NGJ5 315 aa9.11□□□□□ -0.95
SRP54-208ENST00000555557 ZNF519Q8TB69 540 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms