RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 BCL7BQ9BQE9 202 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 TMEM246Q9BRR3 403 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 RIOK1Q9BRS2 568 aaKnown RBP1.81□□□□□ -2.12
VRK1-202ENST00000553683 RIOK2Q9BVS4 552 aaKnown RBP1.81□□□□□ -2.12
VRK1-202ENST00000553683 TMEM117Q9H0C3 514 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 NXF5Q9H1B4 397 aaKnown RBP1.81□□□□□ -2.12
VRK1-202ENST00000553683 DEFB127Q9H1M4 99 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 CLSTN2Q9H4D0 955 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 CCL28Q9NRJ3 127 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 SDHAF3Q9NRP4 125 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 NMRK1Q9NWW6 199 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 TAS2R3Q9NYW6 316 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 SIGLEC8Q9NYZ4 499 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 C15orf41Q9Y2V0 281 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 AP1M2Q9Y6Q5 423 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 SF3B1O75533 1304 aaKnown RBP eCLIP1.81□□□□□ -2.12
VRK1-202ENST00000553683 WDR19Q8NEZ3 1342 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 HIVEP2P31629 2446 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 COL1A2P08123 1366 aa1.81□□□□□ -2.12
VRK1-202ENST00000553683 TSPOAP1O95153 1857 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 LOC100653049A0A140TA62 436 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 A0A1B0GUS0 222 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 A0A1B0GWJ7 208 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 VSTM2BA6NLU5 285 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 IDSB3KWA1 339 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 LOC110117498-PIK3R3F6TDL0 507 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 BTN3A3O00478 584 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 CXCL11O14625 94 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 OR1F1O43749 312 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 UGT1A9O60656 530 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 KRT34O76011 436 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 LRATO95237 230 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 CISD3P0C7P0 127 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 RBMY1CP0DJD4 496 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 POLR2EP19388 210 aaKnown RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 UQCRC2P22695 453 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 GDI1P31150 447 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 SLC26A3P40879 764 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 MAP3K8P41279 467 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 RPS9P46781 194 aaKnown RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 CAMLGP49069 296 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 MYL6P60660 151 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 DSTNP60981 165 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 ACTR1AP61163 376 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 RPS14P62263 151 aaKnown RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 SLAQ13239 276 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 DOC2AQ14183 400 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 GNA13Q14344 377 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 MICBQ29980 383 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 FAM83EQ2M2I3 478 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 SLC25A52Q3SY17 297 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 LRRC10Q5BKY1 277 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 FBXO48Q5FWF7 155 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 GPRC6AQ5T6X5 926 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 CENPPQ6IPU0 288 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 NCCRP1Q6ZVX7 275 aaPredicted RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 H2AFVQ71UI9 128 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 ZNF571Q7Z3V5 609 aaPredicted RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 PAQR7Q86WK9 346 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 ARRDC1Q8N5I2 433 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 SYT14Q8NB59 555 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 CATSPER1Q8NEC5 780 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 STXBP6Q8NFX7 210 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 OR4D9Q8NGE8 314 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 OR56B2PQ8NGI1 322 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 OR8K3Q8NH51 312 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 UBALD1Q8TB05 177 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 PHOSPHO2Q8TCD6 241 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 PIBF1Q8WXW3 757 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 TMEM158Q8WZ71 300 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 ARPC1AQ92747 370 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 EFHD2Q96C19 240 aaPredicted RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 TUBGCP3Q96CW5 907 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 C19orf60Q96EN9 201 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 RIT2Q99578 217 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 NPAS2Q99743 824 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 THUMPD2Q9BTF0 503 aaKnown RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 GCOM2Q9BZD3 368 aaPredicted RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 RAB34Q9BZG1 259 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 DPH5Q9H2P9 285 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 PSTPIP2Q9H939 334 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 UCK1Q9HA47 277 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 FANCEQ9HB96 536 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 ACTR3BQ9P1U1 418 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 ZNF282Q9UDV7 671 aaPredicted RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 ATPIF1Q9UII2 106 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 GNPTGQ9UJJ9 305 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 CFL2Q9Y281 166 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 RPL36Q9Y3U8 105 aaKnown RBP1.8□□□□□ -2.12
VRK1-202ENST00000553683 TTC41PQ6P2S7 1318 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 NINLQ9Y2I6 1382 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 SNAPC4Q5SXM2 1469 aa1.8□□□□□ -2.12
VRK1-202ENST00000553683 TET2Q6N021 2002 aaPredicted RBP1.79□□□□□ -2.12
VRK1-202ENST00000553683 IQANK1A0A1B0GTG1 560 aa1.79□□□□□ -2.12
VRK1-202ENST00000553683 CTAGE15A4D2H0 777 aa1.79□□□□□ -2.12
VRK1-202ENST00000553683 OR6C74A6NCV1 312 aa1.79□□□□□ -2.12
VRK1-202ENST00000553683 CCDC182A6NF36 153 aa1.79□□□□□ -2.12
VRK1-202ENST00000553683 F5H6K3 240 aa1.79□□□□□ -2.12
VRK1-202ENST00000553683 NDUFS8O00217 210 aa1.79□□□□□ -2.12
VRK1-202ENST00000553683 HIP1O00291 1037 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms