RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CELA2AP08217 269 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 CD8BP10966 210 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 PLPPR5Q32ZL2 321 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 SPANXN2Q5MJ10 180 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 EEF1A1P5Q5VTE0 462 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 SCAIQ8N9R8 606 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 NEIL3Q8TAT5 605 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF417Q8TAU3 575 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF519Q8TB69 540 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF587Q96SQ5 575 aaPredicted RBP23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 CDC6Q99741 560 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 NPAS1Q99742 590 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 COPS3Q9UNS2 423 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 VDAC3Q9Y277 283 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 CHCHD2Q9Y6H1 151 aaPredicted RBP23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 LOC110117498-PIK3R3F6TDL0 507 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 CASKO14936 926 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 ID4P47928 161 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 ACKR1Q16570 336 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 TP53I3Q53FA7 332 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 CCDC157Q569K6 752 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 SLC6A19Q695T7 634 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 DCDC5Q6ZRR9 648 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 FADS6Q8N9I5 356 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 AP3S1Q92572 193 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 DNAJA3Q96EY1 480 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 FRMD6Q96NE9 622 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 TSSK2Q96PF2 358 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 MNTQ99583 582 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 SRA1Q9HD15 236 aaKnown RBP23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 PISDQ9UG56 409 aa23.76■■□□□ 1.39
CCDC88C-205ENST00000553403 SLC35F4A4IF30 521 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 FAM47E-STBD1D6RA91 191 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 ARHGEF9O43307 516 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 UPK1BO75841 260 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 TNFSF8P32971 234 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 ACVR1BP36896 505 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 IFITM3Q01628 133 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 ARMC10Q8N2F6 343 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 CENPSQ8N2Z9 138 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 MS4A15Q8N5U1 240 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 PELI1Q96FA3 418 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 SLC30A2Q9BRI3 323 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 SPRY4Q9C004 299 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 CMAHPQ9Y471 501 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 FRYLO94915 3013 aa23.75■■□□□ 1.39
CCDC88C-205ENST00000553403 FAM171A2A8MVW0 826 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 FZD7O75084 574 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 JMJD7P0C870 316 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 AHCYP23526 432 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF181Q2M3W8 571 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 CCDC58Q4VC31 144 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 TIGD4Q8IY51 512 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 OR6V1Q8N148 313 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF511Q8NB15 262 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 ASB15Q8WXK1 588 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 PGLYRP3Q96LB9 341 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 MROQ9BYG7 248 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF160Q9HCG1 818 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 SERINC1Q9NRX5 453 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 VSX1Q9NZR4 365 aaPredicted RBP23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 TCFL5Q9UL49 500 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 FKBP7Q9Y680 259 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 GVINP1Q7Z2Y8 2422 aa23.74■■□□□ 1.39
CCDC88C-205ENST00000553403 H7C1C5 153 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 MTNR1BP49286 362 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 SSR4P51571 173 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 LCN6P62502 163 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 SLC3A1Q07837 685 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 RPL22L1Q6P5R6 122 aaKnown RBP23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 LYPD4Q6UWN0 246 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 MINDY2Q8NBR6 621 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 ZNF248Q8NDW4 579 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 ABHD4Q8TB40 342 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 POC1BQ8TC44 478 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 CT55Q8WUE5 264 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 COX4I2Q96KJ9 171 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 MARCH7Q9H992 704 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 TMEM9BQ9NQ34 198 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 UGT2A1Q9Y4X1 527 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 OTOGLQ3ZCN5 2332 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 A0A1W2PRG6 482 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 ISPDA4D126 451 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 PRSS37A4D1T9 235 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 DCTN6O00399 190 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 SNX4O95219 450 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 GTF2E2P29084 291 aaKnown RBP23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 TGM4P49221 684 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 CENPAP49450 140 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 MLF1P58340 268 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 SIRPAP78324 504 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 CDK5R1Q15078 307 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 KIF26BQ2KJY2 2108 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 IL20RBQ6UXL0 311 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 H1FNTQ75WM6 255 aaPredicted RBP23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 TIPARPQ7Z3E1 657 aaKnown RBP23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 PPP1R32Q7Z5V6 425 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 KCTD20Q7Z5Y7 419 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 OR4K17Q8NGC6 315 aa23.73■■□□□ 1.39
CCDC88C-205ENST00000553403 ARL5BQ96KC2 179 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms