RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ZNF546Q86UE3 836 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 OR2L13Q8N349 312 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 OR2A1Q8NGT9 310 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 OR6K3Q8NGY3 331 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 FGF13Q92913 245 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TRIM43Q96BQ3 446 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 LRRC3BQ96PB8 259 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 NMNAT3Q96T66 252 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 DNTTIP1Q9H147 329 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM185BQ9H7F4 350 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ZMAT3Q9HA38 289 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF304Q9HCX3 659 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF275Q9NSD4 429 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 FLRT3Q9NZU0 649 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 MED11Q9P086 117 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 EMC3Q9P0I2 261 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 NCDNQ9UBB6 729 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 APOBEC3BQ9UH17 382 aaKnown RBP4.44□□□□□ -1.7
LIMA1-214ENST00000552783 TBX21Q9UL17 535 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 PCDHB10Q9UN67 800 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 WDR45Q9Y484 360 aa4.44□□□□□ -1.7
LIMA1-214ENST00000552783 CELSR3Q9NYQ7 3312 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TRAV20A0A0B4J274 112 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 A0A1W2PQU0 124 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 OTOL1A6NHN0 477 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 RIIAD1A6NNX1 92 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 SNRPGP15A8MWD9 76 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF879B4DU55 563 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 MCIDASD6RGH6 385 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 H7C2Y5 167 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 EMC8O43402 210 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 RAD1O60671 282 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 NDUFS6O75380 124 aaKnown RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TIMP1P01033 207 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 GP1BAP07359 652 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 ERGP11308 486 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 LAMP2P13473 410 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 CNR1P21554 472 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 MEOX2P50222 304 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 MECP2P51608 486 aaKnown RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 SMAD2Q15796 467 aaKnown RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF77Q15935 545 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 AMZ1Q400G9 498 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 C4orf46Q504U0 113 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 C11orf88Q6PI97 169 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 POMZP3Q6PJE2 187 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 UNQ9370/PRO34162Q6UXP9 181 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 UNQ6126/PRO20091Q6UXV3 157 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM64Q6YI46 380 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 STAC2Q6ZMT1 411 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 OVCH1Q7RTY7 1134 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 PM20D2Q8IYS1 436 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 C7orf61Q8IZ16 206 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 OR4C6Q8NH72 309 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 OR5K2Q8NHB8 316 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 NANPQ8TBE9 248 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 WFIKKN2Q8TEU8 576 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 SNX33Q8WV41 574 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TNFAIP8L1Q8WVP5 186 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 HAVCR1Q96D42 359 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 SDF2Q99470 211 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 SRMSQ9H3Y6 488 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 MBNL1Q9NR56 388 aaKnown RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 SLC39A1Q9NY26 324 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 SPHK1Q9NYA1 384 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 GTF2A1LQ9UNN4 478 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TRAPPC13A5PLN9 417 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 RNF222A6NCQ9 220 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 FAM86C2PA6NEL3 165 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 M0QYG6 137 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TO15178 435 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 OR10H2O60403 315 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 ARL6IP5O75915 188 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 GPANK1O95872 356 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 IL5P05113 134 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 CRYBA1P05813 215 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 CA3P07451 260 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 SLC35G6P0C7Q6 338 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 ST6GAL1P15907 406 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 CD53P19397 219 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 CSRP1P21291 193 aaKnown RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 PPIAP62937 165 aaKnown RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 OR7A5Q15622 319 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 NDUFAF6Q330K2 333 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 PLEKHN1Q494U1 663 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 FAM78AQ5JUQ0 283 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TMEM71Q6P5X7 295 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 LILRA6Q6PI73 481 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 RNF44Q7L0R7 432 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 ANKRD33Q7Z3H0 272 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TMPRSS9Q7Z410 1059 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TMED4Q7Z7H5 227 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 CDK20Q8IZL9 346 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 ZNF511Q8NB15 262 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 OR6K6Q8NGW6 343 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 OR14A16Q8NHC5 309 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 PPP1R14AQ96A00 147 aa4.43□□□□□ -1.7
LIMA1-214ENST00000552783 TSACCQ96A04 125 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 S100A16Q96FQ6 103 aaKnown RBP4.43□□□□□ -1.7
LIMA1-214ENST00000552783 INSM2Q96T92 566 aaPredicted RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms