RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 OR8J1Q8NGP2 316 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 OR6X1Q8NH79 312 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 RHOXF1Q8NHV9 184 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 FNDC8Q8TC99 324 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 CPT1CQ8TCG5 803 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 SMPDL3BQ92485 455 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 INTS12Q96CB8 462 aaKnown RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF845Q96IR2 970 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 PRRG3Q9BZD7 231 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 PNPLA3Q9NST1 481 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 LUZP4Q9P127 313 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 KLHL9Q9P2J3 617 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 KLHL21Q9UJP4 597 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF346Q9UL40 294 aaKnown RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 FLVCR1Q9Y5Y0 555 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 NCOA6Q14686 2063 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 PIEZO2Q9H5I5 2752 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 A0A1W2PRG6 482 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 A6NIZ1 184 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 FIGNL2A6NMB9 653 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 TTLL8A6PVC2 850 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 H3BN98 237 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 RNF13O43567 381 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 SS18L1O75177 396 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-211ENST00000552338 AQP8O94778 261 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 OR6A2O95222 327 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 SOX14O95416 240 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 SYNGR4O95473 234 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 F13BP05160 661 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 HLA-DOBP13765 273 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 ZNF43P17038 809 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 KLK2P20151 261 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 MYF6P23409 242 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 DAP3P51398 398 aaKnown RBP8.52□□□□□ -1.05
LIMA1-211ENST00000552338 CXCR4P61073 352 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 RAP1BP61224 184 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 RAP1AP62834 184 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 RBPJQ06330 500 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 RASGEF1BQ0VAM2 473 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 ACKR1Q16570 336 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 OCLNQ16625 522 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 ZIK1Q3SY52 487 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-211ENST00000552338 RTL6Q6ICC9 239 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 OR2A2Q6IF42 318 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 SEM1Q6ZVN7 128 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 SLC35D2Q76EJ3 337 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 ADCK1Q86TW2 530 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 DOLPP1Q86YN1 238 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 UEVLDQ8IX04 471 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 DEPDC4Q8N2C3 294 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 MARVELD2Q8N4S9 558 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 NPEPL1Q8NDH3 523 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 SETD9Q8NE22 299 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 OR9K2Q8NGE7 335 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 ASB10Q8WXI3 467 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 NMD3Q96D46 503 aaKnown RBP8.52□□□□□ -1.05
LIMA1-211ENST00000552338 GMPPAQ96IJ6 420 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-211ENST00000552338 BOD1Q96IK1 185 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 ZNF570Q96NI8 536 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 KCNK17Q96T54 332 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 TM9SF2Q99805 663 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 KATNB1Q9BVA0 655 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 TEX12Q9BXU0 123 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 NMNAT2Q9BZQ4 307 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 TP63Q9H3D4 680 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-211ENST00000552338 TBC1D23Q9NUY8 699 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 VSX1Q9NZR4 365 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-211ENST00000552338 FOXD3Q9UJU5 478 aaPredicted RBP8.52□□□□□ -1.05
LIMA1-211ENST00000552338 CAMK2AQ9UQM7 478 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 FAM215AQ9Y5M1 114 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 ATRXP46100 2492 aa8.52□□□□□ -1.05
LIMA1-211ENST00000552338 SPTA1P02549 2419 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 OR6C65A6NJZ3 312 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 SLC22A20A6NK97 555 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 PRRG2O14669 202 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 SLC19A2O60779 497 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 CNOT4O95628 575 aaKnown RBP8.51□□□□□ -1.05
LIMA1-211ENST00000552338 TGM6O95932 706 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 BCL10O95999 233 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 YES1P07947 543 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 STSP08842 583 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 ACADSP16219 412 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 HIST1H1CP16403 213 aaKnown RBP8.51□□□□□ -1.05
LIMA1-211ENST00000552338 ACVR2AP27037 513 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 NTF4P34130 210 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 CENPAP49450 140 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 PCYT1AP49585 367 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 SLC25A1P53007 311 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 CDC42P60953 191 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 MYBPC1Q00872 1141 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 SRYQ05066 204 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 TMED1Q13445 227 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 PRR30Q53SZ7 412 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-211ENST00000552338 C1orf185Q5T7R7 199 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 RIPPLY2Q5TAB7 128 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 MEDAGQ5VYS4 303 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 TMEM236Q5W0B7 351 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 GFRALQ6UXV0 394 aa8.51□□□□□ -1.05
LIMA1-211ENST00000552338 LSRQ86X29 649 aaPredicted RBP8.51□□□□□ -1.05
LIMA1-211ENST00000552338 TMEM123Q8N131 208 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms