RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SURF4O15260 269 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 RBMXP38159 391 aaKnown RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 ELAVL1Q15717 326 aaKnown RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 ZXDCQ2QGD7 858 aaPredicted RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 C9orf135Q5VTT2 229 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 ZNF611Q8N823 705 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 OR13C9Q8NGT0 318 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 CCDC74AQ96AQ1 378 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 GALNT9Q9HCQ5 603 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 TAS2R8Q9NYW2 309 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 MMACHCQ9Y4U1 282 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 PCYT1BQ9Y5K3 369 aaPredicted RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 SPTBN1Q01082 2364 aaKnown RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 SOD1P00441 154 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 CSNK1A1P48729 337 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 PCBP3P57721 371 aaKnown RBP14.94□□□□□ -0.02
CUX1-213ENST00000549414 RAB12Q6IQ22 244 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 DNAAF1Q8NEP3 725 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 OR4Q3Q8NH05 313 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 SLC52A3Q9NQ40 469 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 POLE3Q9NRF9 147 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 POMT2Q9UKY4 750 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 EMC9Q9Y3B6 208 aa14.94□□□□□ -0.02
CUX1-213ENST00000549414 TMEM265A0A087WTH1 108 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 GDNFP39905 211 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 GLP1RP43220 463 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 SRP9P49458 86 aaKnown RBP14.93□□□□□ -0.02
CUX1-213ENST00000549414 BIDP55957 195 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 HERV-K104P61576 105 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 SLC16A12Q6ZSM3 486 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 RDH10Q8IZV5 341 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 OR4C3Q8NH37 302 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 SLC41A2Q96JW4 573 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 C20orf141Q9NUB4 165 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 A3GALT2U3KPV4 340 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 IDSB3KWA1 339 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 GOSR2O14653 212 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 RP2O75695 350 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 ZNF28P17035 718 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 ATF4P18848 351 aaPredicted RBP14.93□□□□□ -0.02
CUX1-213ENST00000549414 CCR6P51684 374 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 OR10A3P58181 314 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 HTR4Q13639 388 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 SLC35B4Q969S0 331 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 FAM60AQ9NP50 221 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 NUBP2Q9Y5Y2 271 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 SMLR1H3BR10 107 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 ALDOBP05062 364 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 CCR5P51681 352 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 TMPPEQ6ZT21 453 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 UBE3DQ7Z6J8 389 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 OR51D1Q8NGF3 324 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 STT3BQ8TCJ2 826 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 MSANTD3Q96H12 275 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 SLC7A11Q9UPY5 501 aa14.93□□□□□ -0.02
CUX1-213ENST00000549414 SERTM1A2A2V5 107 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ICOSLGO75144 302 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 SLC22A5O76082 557 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 SLC2A1P11166 492 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ZNF16P17020 682 aaPredicted RBP14.92□□□□□ -0.02
CUX1-213ENST00000549414 GALEQ14376 348 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 Q499Y3 187 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 LRRC18Q8N456 261 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 OR4D11Q8NGI4 311 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ZNF587Q96SQ5 575 aaPredicted RBP14.92□□□□□ -0.02
CUX1-213ENST00000549414 SLIRPQ9GZT3 109 aaKnown RBP14.92□□□□□ -0.02
CUX1-213ENST00000549414 AKIP1Q9NQ31 210 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ZNF850A8MQ14 1090 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 CPEP16870 476 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ELK1P19419 428 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 HTR3AP46098 478 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 INSL4Q14641 139 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 TMEM244Q5VVB8 128 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 LINC00696Q6ZRV3 163 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 COX15Q7KZN9 410 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 APH1BQ8WW43 257 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 WDR76Q9H967 626 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 NOX3Q9HBY0 568 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 MEPEQ9NQ76 525 aaPredicted RBP14.92□□□□□ -0.02
CUX1-213ENST00000549414 SPEF1Q9Y4P9 236 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 RGPD3A6NKT7 1758 aaPredicted RBP14.92□□□□□ -0.02
CUX1-213ENST00000549414 DOPEY2Q9Y3R5 2298 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ARRDC5A6NEK1 342 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ZNF736B4DX44 427 aaPredicted RBP14.92□□□□□ -0.02
CUX1-213ENST00000549414 C1orf140Q5VVS0 124 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ZNF565Q8N9K5 539 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 PLPP7Q8NBV4 271 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 OR5D18Q8NGL1 313 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 FAM174AQ8TBP5 190 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 PCNPQ8WW12 178 aaKnown RBP14.92□□□□□ -0.02
CUX1-213ENST00000549414 GIMAP5Q96F15 307 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 ZNF578Q96N58 590 aaPredicted RBP14.92□□□□□ -0.02
CUX1-213ENST00000549414 ZNF442Q9H7R0 627 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 C12orf4Q9NQ89 552 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 RLFQ13129 1914 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 DOCK6Q96HP0 2047 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 A0A087WV62 115 aa14.92□□□□□ -0.02
CUX1-213ENST00000549414 GLCEO94923 617 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms