RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 AAED1Q7RTV5 226 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 BTLAQ7Z6A9 289 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 MRGPRGQ86SM5 289 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 LIX1LQ8IVB5 337 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 LRRC75AQ8NAA5 344 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 FANK1Q8TC84 345 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 OR52D1Q9H346 318 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 PIGMQ9H3S5 423 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 C12orf49Q9H741 205 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 IL20Q9NYY1 176 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 STX18Q9P2W9 335 aaKnown RBP15.19■□□□□ 0.02
LIG1-204ENST00000542460 PROCRQ9UNN8 238 aa15.19■□□□□ 0.02
LIG1-204ENST00000542460 NPIPB13A6NJU9 1138 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 NPIPB4C9JG80 1138 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 AKAP8O43823 692 aaKnown RBP15.18■□□□□ 0.02
LIG1-204ENST00000542460 AGFG2O95081 481 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 BCL10O95999 233 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 CGAP01215 116 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 IFNGR1P15260 489 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 DAPP51397 102 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 DAP3P51398 398 aaKnown RBP15.18■□□□□ 0.02
LIG1-204ENST00000542460 CTXN1P60606 82 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 KLHL17Q6TDP4 642 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 ZNF100Q8IYN0 542 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 ZNF808Q8N4W9 903 aaPredicted RBP15.18■□□□□ 0.02
LIG1-204ENST00000542460 CLDN22Q8N7P3 220 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 LILRB4Q8NHJ6 448 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 CA5BP1Q8WTZ4 195 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 TXNDC15Q96J42 360 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 GPX7Q96SL4 187 aaPredicted RBP15.18■□□□□ 0.02
LIG1-204ENST00000542460 ENKD1Q9H0I2 346 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 TXNIPQ9H3M7 391 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 MED29Q9NX70 200 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 RCE1Q9Y256 329 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 CDH10Q9Y6N8 788 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 ARHGAP21Q5T5U3 1957 aa15.18■□□□□ 0.02
LIG1-204ENST00000542460 WIPF3A6NGB9 483 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 ZNF726A6NNF4 738 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 MCIDASD6RGH6 385 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 PDLIM1O00151 329 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 SMNDC1O75940 238 aaKnown RBP eCLIP15.17■□□□□ 0.021e-7■■■□□ 18.1
LIG1-204ENST00000542460 CD14P08571 375 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 SLC6A6P31641 620 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 OR3A2P47893 321 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 ACKR1Q16570 336 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 SLC25A35Q3KQZ1 300 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 CASP12Q6UXS9 341 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 THSD4Q6ZMP0 1018 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 DPY19L2P2Q6ZN68 376 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 IGFN1Q86VF2 1251 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 KIF18BQ86Y91 864 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 FAM26EQ8N5C1 309 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 ITLN2Q8WWU7 325 aaPredicted RBP15.17■□□□□ 0.02
LIG1-204ENST00000542460 APH1AQ96BI3 265 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 SAMD8Q96LT4 415 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 ADAD1Q96M93 576 aaKnown RBP15.17■□□□□ 0.02
LIG1-204ENST00000542460 CIB1Q99828 191 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 RBM4BQ9BQ04 359 aaKnown RBP15.17■□□□□ 0.02
LIG1-204ENST00000542460 C9orf16Q9BUW7 83 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 RBM4Q9BWF3 364 aaKnown RBP15.17■□□□□ 0.02
LIG1-204ENST00000542460 EGLN3Q9H6Z9 239 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 SMURF2Q9HAU4 748 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 NRIP3Q9NQ35 241 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 IL20RAQ9UHF4 553 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 POFUT2Q9Y2G5 429 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 FLNCQ14315 2725 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 DOCK7Q96N67 2140 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 SLC35F4A4IF30 521 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 MSTNO14793 375 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 ZNF432O94892 652 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 IGHMP01871 453 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 BIDP55957 195 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 ANKRD34AQ69YU3 496 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 KDM4DQ6B0I6 523 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 NIPAL3Q6P499 406 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 TFAP2EQ6VUC0 442 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 HDDC2Q7Z4H3 204 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 RELL2Q8NC24 303 aaPredicted RBP15.17■□□□□ 0.02
LIG1-204ENST00000542460 OR52L1Q8NGH7 329 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 OR6X1Q8NH79 312 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 EME1Q96AY2 570 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 EMC6Q9BV81 110 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 KATNB1Q9BVA0 655 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 POLDIP3Q9BY77 421 aaKnown RBP15.17■□□□□ 0.02
LIG1-204ENST00000542460 PAPOLBQ9NRJ5 636 aaKnown RBP15.17■□□□□ 0.02
LIG1-204ENST00000542460 KRT84Q9NSB2 600 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 REV1Q9UBZ9 1251 aa15.17■□□□□ 0.02
LIG1-204ENST00000542460 MYO7BQ6PIF6 2116 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 HIVEP3Q5T1R4 2406 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 MED12LQ86YW9 2145 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 OR6C65A6NJZ3 312 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 EEF1E1-BLOC1S5C9J1V9 151 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 EEF1E1O43324 174 aaKnown RBP15.16■□□□□ 0.02
LIG1-204ENST00000542460 SLC43A1O75387 559 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 TP53P04637 393 aaPredicted RBP15.16■□□□□ 0.02
LIG1-204ENST00000542460 OSMP13725 252 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 SELENOPP49908 381 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 RPL27P61353 136 aaKnown RBP15.16■□□□□ 0.02
LIG1-204ENST00000542460 ERVK-25P63136 954 aa15.16■□□□□ 0.02
LIG1-204ENST00000542460 PPP2R2BQ00005 443 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms