RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 C9orf135Q5VTT2 229 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 C16orf89Q6UX73 402 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 C20orf196Q8IYI0 205 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 LRRC17Q8N6Y2 441 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 CCDC197Q8NCU1 140 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 PIK3C3Q8NEB9 887 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 OR1K1Q8NGR3 316 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 OR52N5Q8NH56 324 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 PFN4Q8NHR9 129 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 MAGEE2Q8TD90 523 aaPredicted RBP11.49□□□□□ -0.57
LTBR-208ENST00000541005 NELFAQ9H3P2 528 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 ANKRD19PQ9H560 264 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 UBTD1Q9HAC8 227 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 C20orf141Q9NUB4 165 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 DCAF13Q9NV06 445 aaKnown RBP11.49□□□□□ -0.57
LTBR-208ENST00000541005 TAS2R5Q9NYW4 299 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 EGFL7Q9UHF1 273 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 MAGEL2Q9UJ55 1249 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 ADAM21Q9UKJ8 722 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 ITGB1BP2Q9UKP3 347 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 SAMD4AQ9UPU9 718 aaKnown RBP11.49□□□□□ -0.57
LTBR-208ENST00000541005 MED31Q9Y3C7 131 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 SNX13Q9Y5W8 968 aa11.49□□□□□ -0.57
LTBR-208ENST00000541005 MAP1AP78559 2803 aaPredicted RBP11.49□□□□□ -0.57
LTBR-208ENST00000541005 CHD3Q12873 2000 aaKnown RBP11.48□□□□□ -0.57
LTBR-208ENST00000541005 ARPC4-TTLL3A0A0A6YYG9 625 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 OR7A10O76100 309 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 OR6A2O95222 327 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 HOXB1P14653 301 aaPredicted RBP11.48□□□□□ -0.57
LTBR-208ENST00000541005 HOXC12P31275 282 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 SLC25A3Q00325 362 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 ROR2Q01974 943 aaKnown RBP11.48□□□□□ -0.57
LTBR-208ENST00000541005 TBRG1Q3YBR2 411 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 GLYATQ6IB77 296 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 HMBOX1Q6NT76 420 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 ANKRD16Q6P6B7 361 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 KLHL17Q6TDP4 642 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 TMEM108Q6UXF1 575 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 FKBP9P1Q75LS8 142 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 NANOGNBQ7Z5D8 188 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 TSEN54Q7Z6J9 526 aaKnown RBP11.48□□□□□ -0.57
LTBR-208ENST00000541005 DEFB107AQ8IZN7 70 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 GPR137CQ8N3F9 429 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 RNF148Q8N7C7 305 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 ZNF611Q8N823 705 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 LILRB1Q8NHL6 650 aaPredicted RBP11.48□□□□□ -0.57
LTBR-208ENST00000541005 BCL2L2Q92843 193 aaPredicted RBP11.48□□□□□ -0.57
LTBR-208ENST00000541005 PIGTQ969N2 578 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 SGTBQ96EQ0 304 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 RADILQ96JH8 1075 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 ADAD1Q96M93 576 aaKnown RBP11.48□□□□□ -0.57
LTBR-208ENST00000541005 GPR35Q9HC97 309 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 MED29Q9NX70 200 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 MGAT4BQ9UQ53 548 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 ENPP4Q9Y6X5 453 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 MTORP42345 2549 aa11.48□□□□□ -0.57
LTBR-208ENST00000541005 SLC35F4A4IF30 521 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 NPIPB13A6NJU9 1138 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 SHISA9B4DS77 424 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 NPIPB4C9JG80 1138 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 J3KTA2 159 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 GMNNO75496 209 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 WNT11O96014 354 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 HIST1H2ABP04908 130 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 IFNGR1P15260 489 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 FUT4P22083 530 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 AHCYP23526 432 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 PTAFRP25105 342 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 CD40P25942 277 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 PRPS1P60891 318 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 RPL18Q07020 188 aaKnown RBP11.47□□□□□ -0.57
LTBR-208ENST00000541005 TRAM2Q15035 370 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 ZNF672Q499Z4 452 aaPredicted RBP11.47□□□□□ -0.57
LTBR-208ENST00000541005 HIKESHIQ53FT3 197 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 ALKBH2Q6NS38 261 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 KLHL24Q6TFL4 600 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 HIST3H2AQ7L7L0 130 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 ZNF627Q7L945 461 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 WDFY1Q8IWB7 410 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 ARHGAP24Q8N264 748 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 FAM169BQ8N8A8 192 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 FAM156AQ8NDB6 213 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 RBM15BQ8NDT2 890 aaKnown RBP11.47□□□□□ -0.57
LTBR-208ENST00000541005 KBTBD8Q8NFY9 601 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 OR6X1Q8NH79 312 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 ACOT11Q8WXI4 607 aaPredicted RBP11.47□□□□□ -0.57
LTBR-208ENST00000541005 AKAP1Q92667 903 aaKnown RBP eCLIP11.47□□□□□ -0.57
LTBR-208ENST00000541005 HIST1H2ACQ93077 130 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 TXNDC15Q96J42 360 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 C7orf34Q96L11 122 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 CDRT15Q96T59 188 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 CCL19Q99731 98 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 FNDC11Q9BVV2 318 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 CRLF2Q9HC73 371 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 MOV10Q9HCE1 1003 aaKnown RBP11.47□□□□□ -0.57
LTBR-208ENST00000541005 NDUFAF4Q9P032 175 aa11.47□□□□□ -0.57
LTBR-208ENST00000541005 CRNNQ9UBG3 495 aaPredicted RBP11.47□□□□□ -0.57
LTBR-208ENST00000541005 A0A1W2PR80 420 aa11.46□□□□□ -0.57
LTBR-208ENST00000541005 ZNF726A6NNF4 738 aa11.46□□□□□ -0.57
LTBR-208ENST00000541005 ZNF99A8MXY4 864 aaPredicted RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms