RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 LTC4SQ16873 150 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 IL20RBQ6UXL0 311 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 B3GLCTQ6Y288 498 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CLDN22Q8N7P3 220 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 FRMD1Q8N878 549 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 OR5H6Q8NGV6 325 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 PHYHIPQ92561 330 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 TMEM106AQ96A25 262 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 PDLIM5Q96HC4 596 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 OR52A5Q9H2C5 316 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 ARNT2Q9HBZ2 717 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SEMA4GQ9NTN9 838 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SSUH2Q9Y2M2 353 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 KLK4Q9Y5K2 254 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 ACOD1A6NK06 481 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 TIMM8AO60220 97 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SNRPBP14678 240 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CCR7P32248 378 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CXCL12P48061 93 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 PRLHRP49683 370 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SLC35A1P78382 337 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CTBSQ01459 385 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF252P-AS1Q0IIN9 211 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 EBPQ15125 230 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SMAD2Q15796 467 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CTSL3PQ5NE16 218 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 C18orf63Q68DL7 685 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 NRARPQ7Z6K4 114 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SLC51BQ86UW2 128 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 KLHDC8BQ8IXV7 354 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 MDGA1Q8NFP4 955 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 OR13C2Q8NGS9 318 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 FOXN4Q96NZ1 517 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SLAMF7Q9NQ25 335 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 MUTYHQ9UIF7 546 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 TMEM72A0PK05 275 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 OR5K3A6NET4 321 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 DRGXA6NNA5 263 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 PPP1R2P9O14990 202 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 TRAF3IP2O43734 574 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 C1orf105O95561 183 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SLC2A1P11166 492 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 NME2P22392 152 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SLC1A3P43003 542 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 FABP6P51161 128 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CLDN2P57739 230 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 RAB6CQ53S08 254 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 AVPI1Q5T686 147 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 OGFOD3Q6PK18 319 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 PARS2Q7L3T8 475 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CNTN4Q8IWV2 1026 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 AGBL5Q8NDL9 886 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 MACROD1Q9BQ69 325 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 RAB6CQ9H0N0 254 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 HEYLQ9NQ87 328 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CORINQ9Y5Q5 1042 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 PRRC2BQ5JSZ5 2229 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 ATP6V1G2-DDX39BF2Z307 99 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 DFFBO76075 338 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 AOAHP28039 575 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 LAP3P28838 519 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 ECI1P42126 302 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 MTNR1BP49286 362 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 HBA1P69905 142 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 PHYHD1Q5SRE7 291 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 OR5M10Q6IEU7 315 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SLC43A2Q8N370 569 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SLC22A24Q8N4F4 322 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 TOE1Q96GM8 510 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SEC22AQ96IW7 307 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 EGLN2Q96KS0 407 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 SEC22CQ9BRL7 303 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 ABHD6Q9BV23 337 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 RANGRFQ9HD47 186 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 PURGQ9UJV8 347 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 TEX51A0A1B0GUA7 166 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 PRSS38A1L453 326 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 LRP5LA4QPB2 252 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 ZIC2O95409 532 aaPredicted RBP9.86□□□□□ -0.83
CLIP1-209ENST00000537178 ABHD16AO95870 558 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 IMPA1P29218 277 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 SLC7A9P82251 487 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 SPCS2Q15005 226 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 Q6ZTK2 550 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 LRRTM3Q86VH5 581 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 TMEM200AQ86VY9 491 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 FAM58AQ8N1B3 248 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 INTS12Q96CB8 462 aaKnown RBP9.86□□□□□ -0.83
CLIP1-209ENST00000537178 RNF170Q96K19 258 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 ATOH8Q96SQ7 321 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 NUDT22Q9BRQ3 303 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 SELENOIQ9C0D9 397 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 NKX2-4Q9H2Z4 354 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 TREX1Q9NSU2 369 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 LRIT1Q9P2V4 623 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 SH3BGRL2Q9UJC5 107 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 EXO1Q9UQ84 846 aaKnown RBP9.86□□□□□ -0.83
CLIP1-209ENST00000537178 GPR171O14626 319 aa9.86□□□□□ -0.83
CLIP1-209ENST00000537178 NSA2O95478 260 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms