RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 OR6N1Q8NGY5 312 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 PRR14Q9BWN1 585 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 PLK3Q9H4B4 646 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 RABEP2Q9H5N1 569 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 ZNF442Q9H7R0 627 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 EVA1AQ9H8M9 152 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 VAPAQ9P0L0 249 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 SLAMF8Q9P0V8 285 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 ANGPT4Q9Y264 503 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 SPEF1Q9Y4P9 236 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 NOX1Q9Y5S8 564 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 A0A087WUJ7 227 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 SH3PXD2BA1X283 911 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 ZNF99A8MXY4 864 aaPredicted RBP12.78□□□□□ -0.36
VPS28-215ENST00000531924 TPST1O60507 370 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 SERPINI2O75830 405 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 SEC14L2O76054 403 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 CELA3BP08861 270 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 POU3F1Q03052 451 aaPredicted RBP12.78□□□□□ -0.36
VPS28-215ENST00000531924 HGFACQ04756 655 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 SNTB2Q13425 540 aaKnown RBP12.78□□□□□ -0.36
VPS28-215ENST00000531924 DAG1Q14118 895 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 SQLEQ14534 574 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 OR1Q1Q15612 314 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 CYP51A1Q16850 503 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 PAGE3Q5JUK9 113 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 BEND6Q5SZJ8 279 aaPredicted RBP12.78□□□□□ -0.36
VPS28-215ENST00000531924 ZNF813Q6ZN06 617 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 MDP1Q86V88 176 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 FUNDC1Q8IVP5 155 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 MSRB3Q8IXL7 192 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 SCAIQ8N9R8 606 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 HIPK4Q8NE63 616 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 OR6S1Q8NH40 331 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 NEU4Q8WWR8 484 aaPredicted RBP12.78□□□□□ -0.36
VPS28-215ENST00000531924 EBF4Q9BQW3 602 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 EMC6Q9BV81 110 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 NELFAQ9H3P2 528 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 TMEM38AQ9H6F2 299 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 SEC61A2Q9H9S3 476 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 SLCO1B3Q9NPD5 702 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 CMAHPQ9Y471 501 aa12.78□□□□□ -0.36
VPS28-215ENST00000531924 STAB1Q9NY15 2570 aa12.77□□□□□ -0.36
VPS28-215ENST00000531924 IGKV1D-42A0A075B6H8 117 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 IGHV2OR16-5A0A0B4J2B6 119 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 VWC2LB2RUY7 222 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 TRAF3IP2O43734 574 aaPredicted RBP12.77□□□□□ -0.37
VPS28-215ENST00000531924 TGFAP01135 160 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 HLA-HP01893 362 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 VIMP08670 466 aaKnown RBP12.77□□□□□ -0.37
VPS28-215ENST00000531924 DAOP14920 347 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 HOXB9P17482 250 aaPredicted RBP12.77□□□□□ -0.37
VPS28-215ENST00000531924 LSP1P33241 339 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 PUDPQ08623 228 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 GSG1Q2KHT4 349 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 TRMT5Q32P41 509 aaKnown RBP12.77□□□□□ -0.37
VPS28-215ENST00000531924 GLIPR1L2Q4G1C9 344 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 SWT1Q5T5J6 900 aaKnown RBP12.77□□□□□ -0.37
VPS28-215ENST00000531924 GKAP1Q5VSY0 366 aaPredicted RBP12.77□□□□□ -0.37
VPS28-215ENST00000531924 KRT80Q6KB66 452 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 PHC2Q8IXK0 858 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 C20orf196Q8IYI0 205 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 TMEM123Q8N131 208 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 ARIH2OSQ8N7S6 290 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 C11orf65Q8NCR3 313 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 ZNF837Q96EG3 531 aaPredicted RBP12.77□□□□□ -0.37
VPS28-215ENST00000531924 ULBP2Q9BZM5 246 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 RTTNQ86VV8 2226 aa12.77□□□□□ -0.37
VPS28-215ENST00000531924 A0A0B4J2E0 115 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 IGHV4-61A0A0C4DH41 118 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 A0A1B0GX12 115 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 SLC35F4A4IF30 521 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 MS4A18H0YCH9 400 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 RAB36O95755 333 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 HPRP00739 348 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 HLA-DOBP13765 273 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 ZNF23P17027 643 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 GPX2P18283 190 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 ATP4BP51164 291 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 CHN2P52757 468 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 CDH12P55289 794 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 GALK2Q01415 458 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 PIGFQ07326 219 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 CAMK2DQ13557 499 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 ADRM1Q16186 407 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 MS4A18Q3C1V0 323 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 FAM120AOSQ5T036 256 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 COMTD1Q86VU5 262 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 SMYD1Q8NB12 490 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 CKAP2Q8WWK9 683 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 MSI2Q96DH6 328 aaKnown RBP12.76□□□□□ -0.37
VPS28-215ENST00000531924 LRR1Q96L50 414 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 MCHR1Q99705 422 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 TMEM43Q9BTV4 400 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 BPESC1Q9GZL8 116 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 MED29Q9NX70 200 aa12.76□□□□□ -0.37
VPS28-215ENST00000531924 MRPL39Q9NYK5 338 aaKnown RBP12.76□□□□□ -0.37
VPS28-215ENST00000531924 ANGPT2O15123 496 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 FZD7O75084 574 aa12.75□□□□□ -0.37
VPS28-215ENST00000531924 ENTPD5O75356 428 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms