RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 C1orf140Q5VVS0 124 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 PRAMEF8Q5VWM4 474 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 PRAMEF7Q5VXH5 474 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 HACD2Q6Y1H2 254 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 ZNF836Q6ZNA1 936 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 LRRC74BQ6ZQY2 392 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 ABHD12BQ7Z5M8 362 aaPredicted RBP5.68□□□□□ -1.5
CD44-221ENST00000526000 ARPINQ7Z6K5 226 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 FUNDC1Q8IVP5 155 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 ZNF786Q8N393 782 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 OR4F15Q8NGB8 312 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 OR52P1PQ8NH57 321 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 CLDND2Q8NHS1 167 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 RNF217Q8TC41 542 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 MIPOL1Q8TD10 442 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 NEU4Q8WWR8 484 aaPredicted RBP5.68□□□□□ -1.5
CD44-221ENST00000526000 OIT3Q8WWZ8 545 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 NEURL3Q96EH8 262 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 SH3GL1Q99961 368 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 EMC6Q9BV81 110 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 KATNB1Q9BVA0 655 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 SF3B5Q9BWJ5 86 aaKnown RBP5.68□□□□□ -1.5
CD44-221ENST00000526000 MRPL37Q9BZE1 423 aaKnown RBP5.68□□□□□ -1.5
CD44-221ENST00000526000 OR51B6Q9H340 312 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 NELFAQ9H3P2 528 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 EXOSC3Q9NQT5 275 aaKnown RBP5.68□□□□□ -1.5
CD44-221ENST00000526000 POLE3Q9NRF9 147 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 HIF1ANQ9NWT6 349 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 GID8Q9NWU2 228 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 NDE1Q9NXR1 346 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 CCDC167Q9P0B6 97 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 REV1Q9UBZ9 1251 aa5.68□□□□□ -1.5
CD44-221ENST00000526000 A8MVM7 634 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 PPIHO43447 177 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 HNRNPCL1O60812 293 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 SERPINI2O75830 405 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 ATP5HO75947 161 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 AHSA1O95433 338 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 ANP32DO95626 131 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 HLA-HP01893 362 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 DBIP07108 87 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 ERCC1P07992 297 aaPredicted RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 GUSBP08236 651 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 TACSTD2P09758 323 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 PNMTP11086 282 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 NAT2P11245 290 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 COX4I1P13073 169 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 ETFAP13804 333 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 ZNF43P17038 809 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 GIFP27352 417 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 CRATP43155 626 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 GPR6P46095 362 aaPredicted RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 PPOXP50336 477 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 COPZ1P61923 177 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 MVKQ03426 396 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 RIN1Q13671 783 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 GNA13Q14344 377 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 EFNB3Q15768 340 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 TRMT5Q32P41 509 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 MMEL1Q495T6 779 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 GTDC1Q4AE62 458 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 ZNF311Q5JNZ3 666 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 ELFN2Q5R3F8 820 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 LRIF1Q5T3J3 769 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 AVPI1Q5T686 147 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 WBP2NLQ6ICG8 309 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 SHQ1Q6PI26 577 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 TRPM8Q7Z2W7 1104 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 PEG10Q86TG7 708 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 GLCCI1Q86VQ1 547 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 MEX3DQ86XN8 651 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 PEX5LQ8IYB4 626 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 GPR137CQ8N3F9 429 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 OR9I1Q8NGQ6 314 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 C22orf15Q8WYQ4 148 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 GTF2H4Q92759 462 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 YIPF5Q969M3 257 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 KTI12Q96EK9 354 aaPredicted RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 TXNDC15Q96J42 360 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 ANKRD27Q96NW4 1050 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 TRNT1Q96Q11 434 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 PANX1Q96RD7 426 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 HOPXQ9BPY8 73 aaPredicted RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 SPATA9Q9BWV2 254 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 C1QTNF5Q9BXJ0 243 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 EFCAB1Q9HAE3 211 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 NOX3Q9HBY0 568 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 GPR35Q9HC97 309 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 MYOZ1Q9NP98 299 aaPredicted RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 OBP2BQ9NPH6 170 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 SLC52A3Q9NQ40 469 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 MYEF2Q9P2K5 600 aaKnown RBP5.67□□□□□ -1.5
CD44-221ENST00000526000 DUSP13Q9UII6 198 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 CMAHPQ9Y471 501 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 NOX1Q9Y5S8 564 aa5.67□□□□□ -1.5
CD44-221ENST00000526000 LOC105371242A0A075B767 164 aa5.66□□□□□ -1.5
CD44-221ENST00000526000 ARPC4-TTLL3A0A0A6YYG9 625 aa5.66□□□□□ -1.5
CD44-221ENST00000526000 TMEM247A6NEH6 219 aa5.66□□□□□ -1.5
CD44-221ENST00000526000 EVPLLA8MZ36 301 aa5.66□□□□□ -1.5
CD44-221ENST00000526000 B4DSR2 109 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms