RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 VRK2Q86Y07 508 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 KIRREL3Q8IZU9 778 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 CLIP4Q8N3C7 705 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 GTPBP8Q8N3Z3 284 aaPredicted RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 ACBD4Q8NC06 268 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 OR5W2Q8NH69 310 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 OR10D3Q8NH80 312 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 OR2V1Q8NHB1 315 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 GOT1L1Q8NHS2 421 aaPredicted RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 OSR1Q8TAX0 266 aaPredicted RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 MIPOL1Q8TD10 442 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 ZFP90Q8TF47 636 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 GTF2H4Q92759 462 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 RNASE6Q93091 150 aaKnown RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 MAL2Q969L2 176 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 ITCHQ96J02 903 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 MPP4Q96JB8 637 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 MAELQ96JY0 434 aaKnown RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 TREX2Q9BQ50 279 aaPredicted RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 RBM24Q9BX46 236 aaKnown RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 SRXN1Q9BYN0 137 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 LAT2Q9GZY6 243 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 PAIP1Q9H074 479 aaKnown RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 MTHFD2LQ9H903 347 aaPredicted RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 VIPAS39Q9H9C1 493 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 MCCC2Q9HCC0 563 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 TCF7L2Q9NQB0 619 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 SDR39U1Q9NRG7 319 aaPredicted RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 EXD2Q9NVH0 621 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 ARGLU1Q9NWB6 273 aaPredicted RBP4.03□□□□□ -1.76
NUP54-206ENST00000508465 CCDC167Q9P0B6 97 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 ICAM5Q9UMF0 924 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 L3MBTL1Q9Y468 752 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 WDR45Q9Y484 360 aa4.03□□□□□ -1.76
NUP54-206ENST00000508465 ARHGAP21Q5T5U3 1957 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 TUBAL3A6NHL2 446 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 A8MXE2 369 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 CLIC1O00299 241 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 ADAMDEC1O15204 470 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 POLR3GO15318 223 aaPredicted RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 EIF4E2O60573 245 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 CTAG2O75638 210 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 SOX30O94993 753 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 KRT75O95678 551 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 PLGP00747 810 aaPredicted RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 CGAP01215 116 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 TFPTP0C1Z6 253 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 GKN3PP0CG01 181 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 TFPIP10646 304 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 PRG2P13727 222 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 ME2P23368 584 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 CPOXP36551 454 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 PGM1P36871 562 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 CDKN2AP42771 156 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 CPA2P48052 419 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 IDH2P48735 452 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 MAP2K6P52564 334 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 MVDP53602 400 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 RPS3AP61247 264 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 RAB1AP62820 205 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 KCNJ10P78508 379 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 MERTKQ12866 999 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 SKP2Q13309 424 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 TSC22D1Q15714 1073 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 USP43Q70EL4 1123 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 ZNF550Q7Z398 422 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 NUFIP2Q7Z417 695 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 MTERF4Q7Z6M4 381 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 TMEM200AQ86VY9 491 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 MED12LQ86YW9 2145 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 MISPQ8IVT2 679 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 MSRB3Q8IXL7 192 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 LRRC34Q8IZ02 419 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 ZNF619Q8N2I2 560 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 C10orf111Q8N326 155 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 ARFGAP2Q8N6H7 521 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 TRIML2Q8N7C3 387 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 SLC38A5Q8WUX1 472 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 SPDL1Q96EA4 605 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 DTNBP1Q96EV8 351 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 ZC3HAV1LQ96H79 300 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 ADGRG7Q96K78 797 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 MAGEB18Q96M61 343 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 C7orf26Q96N11 449 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 DOCK7Q96N67 2140 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 WFIKKN1Q96NZ8 548 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 TRNT1Q96Q11 434 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 OR5B2Q96R09 309 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 GPATCH1Q9BRR8 931 aaKnown RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 CCDC28BQ9BUN5 200 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 SFXN3Q9BWM7 321 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 RSPO3Q9BXY4 272 aaPredicted RBP4.02□□□□□ -1.77
NUP54-206ENST00000508465 KLHL4Q9C0H6 718 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 OR11A1Q9GZK7 315 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 NMUR2Q9GZQ4 415 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 ZNF350Q9GZX5 532 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 SLC38A1Q9H2H9 487 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 RMND5AQ9H871 391 aa4.02□□□□□ -1.77
NUP54-206ENST00000508465 RNF122Q9H9V4 155 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms