RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PLCXD2Q0VAA5 305 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IRF3Q14653 427 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SSX1Q16384 188 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NKAPLQ5M9Q1 402 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SERPINA12Q8IW75 414 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CMIPQ8IY22 773 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SLC38A1Q9H2H9 487 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TMEM74BQ9NUR3 256 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NDUFB11Q9NX14 153 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 KLHL9Q9P2J3 617 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SLC6A5Q9Y345 797 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 A0A087WUU8 490 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 AIPO00170 330 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PRODHO43272 600 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HEXBP07686 556 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 UBBP0CG47 229 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 UBCP0CG48 685 aaKnown RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 KCNJ5P48544 419 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 EIF5AP63241 154 aaKnown RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 EIPR1Q53HC9 387 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MFSD12Q6NUT3 480 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF600Q6ZNG1 722 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CALHM3Q86XJ0 350 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NANOGP1Q8N7R0 232 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GPR32P1Q8NGA4 272 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CASTOR1Q8WTX7 329 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 THEM6Q8WUY1 208 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SPRYD4Q8WW59 207 aaPredicted RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GIMAP5Q96F15 307 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GABARAPL3Q9BY60 117 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ACSS1Q9NUB1 689 aaPredicted RBP9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IL20Q9NYY1 176 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GNG8Q9UK08 70 aa9.89□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IGHV5-51A0A0C4DH38 117 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 XKRYO14609 159 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF254O75437 659 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GTF2F2P13984 249 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RBMS1P29558 406 aaKnown RBP9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HAAOP46952 286 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PTH2RP49190 550 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PRKXP51817 358 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HCCSP53701 268 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 YPEL5P62699 121 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 APOOLQ6UXV4 268 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 KCTD9Q7L273 389 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SLC29A4Q7RTT9 530 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SLC22A18ASQ8N1D0 253 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 DUSP18Q8NEJ0 188 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR2T33Q8NG76 320 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LMF1Q96S06 567 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NUDT22Q9BRQ3 303 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GFOD1Q9NXC2 390 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CENPVL1A0A0U1RR11 272 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TVP23AA6NH52 213 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HTR3BO95264 441 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SDHBP21912 280 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SEC61A1P61619 476 aaKnown RBP9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SNRPNP63162 240 aaKnown RBP9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 AGERQ15109 404 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FAM69AQ5T7M9 428 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HACD4Q5VWC8 232 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 FAHD1Q6P587 224 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ARMC10Q8N2F6 343 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TMEM52Q8NDY8 209 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR4D11Q8NGI4 311 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NKD1Q969G9 470 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CXorf58Q96LI9 332 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SEC61A2Q9H9S3 476 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 MYEF2Q9P2K5 600 aaKnown RBP9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TRAPPC13A5PLN9 417 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TSTD3H0UI37 97 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SOCS6O14544 535 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PDGFBP01127 241 aaPredicted RBP9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 IFNGP01579 166 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 GDNFP39905 211 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 POLR2GP62487 172 aaKnown RBP eCLIP9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 RAB40BQ12829 278 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR1Q1Q15612 314 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LAIR2Q6ISS4 152 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 BAIAP2L2Q6UXY1 529 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LIX1LQ8IVB5 337 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CDRT4Q8N9R6 151 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HAVCR1Q96D42 359 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 SLC19A3Q9BZV2 496 aa9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZNF443Q9Y2A4 671 aaPredicted RBP9.88□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TRABD2BA6NFA1 517 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 HOXD4P09016 255 aaPredicted RBP9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CT62P0C5K7 136 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 EDNRAP25101 427 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 PTBP1P26599 531 aaKnown RBP eCLIP9.87□□□□□ -0.833e-8■■■□□ 16.6
MSH5-SAPCD1-207ENST00000493662 PSMB10P40306 273 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 ZIC1Q15915 447 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 LYSMD4Q5XG99 296 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 CARD17Q5XLA6 110 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 C15orf40Q8WUR7 153 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 TMEM239Q8WW34 195 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 OR6C1Q96RD1 312 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 BARHL1Q9BZE3 327 aa9.87□□□□□ -0.83
MSH5-SAPCD1-207ENST00000493662 NXF2Q9GZY0 626 aaKnown RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms