RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 TM4SF18Q96CE8 201 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 ZNF385AQ96PM9 386 aaKnown RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 ATG101Q9BSB4 218 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 CACNG6Q9BXT2 260 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SPRTNQ9H040 489 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 PRORYQ9H606 182 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SRA1Q9HD15 236 aaKnown RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 NDOR1Q9UHB4 597 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SPIN1Q9Y657 262 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 MED19A0JLT2 244 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 BTBD17A6NE02 478 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 GABRR3A8MPY1 467 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 PRKYO43930 277 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 AQP8O94778 261 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 GIPP09681 153 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 RBMS1P29558 406 aaKnown RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 CRISP1P54107 249 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 LSM6P62312 80 aaKnown RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 RHBDD2Q6NTF9 364 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 FBXO42Q6P3S6 717 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 LYPD4Q6UWN0 246 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SLCO4C1Q6ZQN7 724 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 TMUB2Q71RG4 321 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 COX15Q7KZN9 410 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 LRRC28Q86X40 367 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 SPICQ8N5J4 248 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 OR5M3Q8NGP4 307 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 LINGO1Q96FE5 620 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 RERGLQ9H628 205 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 MYOZ1Q9NP98 299 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 H2AFY2Q9P0M6 372 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 HEATR5BQ9P2D3 2071 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 NPEPPSL1A6NEC2 478 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 RHPN2P1A8MT19 583 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 HMSDA8MTL9 139 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 OR7A17O14581 309 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 FFAR2O15552 330 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SUV39H1O43463 412 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 CEACAM4O75871 244 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 CATP04040 527 aaKnown RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 HEXAP06865 529 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SNRPCP09234 159 aaKnown RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 ANXA7P20073 488 aaKnown RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 NPR2P20594 1047 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 S100A3P33764 101 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 MPIP34949 423 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 MELKQ14680 651 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 ZNF660Q6AZW8 331 aaPredicted RBP7.01□□□□□ -1.29
USP4-211ENST00000485450 UQCC3Q6UW78 93 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 GSG1LQ6UXU4 331 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 SLAMF9Q96A28 289 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 ESAMQ96AP7 390 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 DOHHQ9BU89 302 aa7.01□□□□□ -1.29
USP4-211ENST00000485450 DSPPQ9NZW4 1301 aa7□□□□□ -1.29
USP4-211ENST00000485450 DISC1C4P0D8 188 aa7□□□□□ -1.29
USP4-211ENST00000485450 EEF1E1O43324 174 aaKnown RBP7□□□□□ -1.29
USP4-211ENST00000485450 FZD7O75084 574 aa7□□□□□ -1.29
USP4-211ENST00000485450 NCR1O76036 304 aa7□□□□□ -1.29
USP4-211ENST00000485450 KLHL18O94889 574 aa7□□□□□ -1.29
USP4-211ENST00000485450 RAB3DO95716 219 aa7□□□□□ -1.29
USP4-211ENST00000485450 SLC16A8O95907 504 aa7□□□□□ -1.29
USP4-211ENST00000485450 SERPINA3P01011 423 aa7□□□□□ -1.29
USP4-211ENST00000485450 PITPNBP48739 271 aa7□□□□□ -1.29
USP4-211ENST00000485450 SRP9P49458 86 aaKnown RBP7□□□□□ -1.29
USP4-211ENST00000485450 RAP2BP61225 183 aa7□□□□□ -1.29
USP4-211ENST00000485450 SEC61A1P61619 476 aaKnown RBP7□□□□□ -1.29
USP4-211ENST00000485450 CSNK1G2P78368 415 aa7□□□□□ -1.29
USP4-211ENST00000485450 IGLV3-21P80748 117 aaPredicted RBP7□□□□□ -1.29
USP4-211ENST00000485450 SIM1P81133 766 aaPredicted RBP7□□□□□ -1.29
USP4-211ENST00000485450 FABP9Q0Z7S8 132 aa7□□□□□ -1.29
USP4-211ENST00000485450 FAM53BQ14153 422 aa7□□□□□ -1.29
USP4-211ENST00000485450 CEBPEQ15744 281 aa7□□□□□ -1.29
USP4-211ENST00000485450 C10orf91Q5T1B1 145 aa7□□□□□ -1.29
USP4-211ENST00000485450 NAA40Q86UY6 237 aa7□□□□□ -1.29
USP4-211ENST00000485450 ZNF227Q86WZ6 799 aa7□□□□□ -1.29
USP4-211ENST00000485450 MISPQ8IVT2 679 aa7□□□□□ -1.29
USP4-211ENST00000485450 OR9Q2Q8NGE9 314 aa7□□□□□ -1.29
USP4-211ENST00000485450 OR5M1Q8NGP8 315 aa7□□□□□ -1.29
USP4-211ENST00000485450 KAT2AQ92830 837 aa7□□□□□ -1.29
USP4-211ENST00000485450 SLC25A28Q96A46 364 aa7□□□□□ -1.29
USP4-211ENST00000485450 CXorf40BQ96DE9 158 aa7□□□□□ -1.29
USP4-211ENST00000485450 WDR89Q96FK6 387 aaPredicted RBP7□□□□□ -1.29
USP4-211ENST00000485450 TSNAXQ99598 290 aaKnown RBP7□□□□□ -1.29
USP4-211ENST00000485450 C7orf50Q9BRJ6 194 aaKnown RBP7□□□□□ -1.29
USP4-211ENST00000485450 OPA3Q9H6K4 179 aa7□□□□□ -1.29
USP4-211ENST00000485450 NEUROD4Q9HD90 331 aa7□□□□□ -1.29
USP4-211ENST00000485450 TEX10Q9NXF1 929 aaPredicted RBP7□□□□□ -1.29
USP4-211ENST00000485450 RPS6KB2Q9UBS0 482 aa7□□□□□ -1.29
USP4-211ENST00000485450 DLGAP4Q9Y2H0 992 aa7□□□□□ -1.29
USP4-211ENST00000485450 LOC102723996A0A087X1L8 192 aa7□□□□□ -1.29
USP4-211ENST00000485450 OR2M5A3KFT3 312 aa7□□□□□ -1.29
USP4-211ENST00000485450 BLACEA4D250 179 aa7□□□□□ -1.29
USP4-211ENST00000485450 C21orf140B9A014 251 aa7□□□□□ -1.29
USP4-211ENST00000485450 E9PI62 339 aa7□□□□□ -1.29
USP4-211ENST00000485450 CLIC1O00299 241 aa7□□□□□ -1.29
USP4-211ENST00000485450 PRAMEF2O60811 474 aa7□□□□□ -1.29
USP4-211ENST00000485450 PRAF2O60831 178 aa7□□□□□ -1.29
USP4-211ENST00000485450 PTBP3O95758 552 aaKnown RBP7□□□□□ -1.29
USP4-211ENST00000485450 LIMS1P48059 325 aa7□□□□□ -1.29
USP4-211ENST00000485450 WNT4P56705 351 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms