RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ANKK1Q8NFD2 765 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 EPYCQ99645 322 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 PIMREGQ9BSJ6 248 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 MED29Q9NX70 200 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 ANGPT4Q9Y264 503 aa18.7■□□□□ 0.58
USP40-215ENST00000484528 IGHV2OR16-5A0A0B4J2B6 119 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 RNF212BA8MTL3 300 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 SERPINB7O75635 380 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 IFNA2P01563 188 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 HOXB1P14653 301 aaPredicted RBP18.69■□□□□ 0.58
USP40-215ENST00000484528 CBR1P16152 277 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 PAX7P23759 505 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 THBS4P35443 961 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 MTPNP58546 118 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 LSM11P83369 360 aaKnown RBP eCLIP18.69■□□□□ 0.58
USP40-215ENST00000484528 PMS2P3Q13401 168 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 CYP51A1Q16850 503 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 C3orf36Q3SXR2 165 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 RUNDC3AQ59EK9 446 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 CYB5R2Q6BCY4 276 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 RANBP3LQ86VV4 465 aaPredicted RBP18.69■□□□□ 0.58
USP40-215ENST00000484528 PTOV1Q86YD1 416 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 OR4F15Q8NGB8 312 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 SLC41A3Q96GZ6 507 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 TXNDC15Q96J42 360 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 ASPNQ9BXN1 380 aa18.69■□□□□ 0.58
USP40-215ENST00000484528 LOC102725191A0A1B0GVB3 256 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 ZNF99A8MXY4 864 aaPredicted RBP18.68■□□□□ 0.58
USP40-215ENST00000484528 VWC2LB2RUY7 222 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 PDE5AO76074 875 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 MFN2O95140 757 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 MFSD13AQ14CX5 517 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 EFNB3Q15768 340 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 SVOPLQ8N434 492 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 FAM169BQ8N8A8 192 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 SPATA3Q8NHX4 192 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 FOXN4Q96NZ1 517 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 MCHR1Q99705 422 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 PLK3Q9H4B4 646 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 NOX3Q9HBY0 568 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 INTS9Q9NV88 658 aaKnown RBP18.68■□□□□ 0.58
USP40-215ENST00000484528 LEF1Q9UJU2 399 aaPredicted RBP18.68■□□□□ 0.58
USP40-215ENST00000484528 CDC42EP3Q9UKI2 254 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 CORINQ9Y5Q5 1042 aa18.68■□□□□ 0.58
USP40-215ENST00000484528 SLC35F4A4IF30 521 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 hCG_2039718K7EN88 272 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 HLA-HP01893 362 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 NR4A2P43354 598 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 PUDPQ08623 228 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 CAMK2DQ13557 499 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 SPATA21Q7Z572 469 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 RETREG3Q86VR2 466 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 C20orf196Q8IYI0 205 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 ZCCHC24Q8N2G6 241 aaKnown RBP18.67■□□□□ 0.58
USP40-215ENST00000484528 ARIH2OSQ8N7S6 290 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 SCAIQ8N9R8 606 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 C11orf65Q8NCR3 313 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 NUP37Q8NFH4 326 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 BHLHE22Q8NFJ8 381 aaPredicted RBP18.67■□□□□ 0.58
USP40-215ENST00000484528 ARHGDIGQ99819 225 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 BEX2Q9BXY8 128 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 CHODLQ9H9P2 273 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 MOV10Q9HCE1 1003 aaKnown RBP18.67■□□□□ 0.58
USP40-215ENST00000484528 USP22Q9UPT9 525 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 NDUFAF1Q9Y375 327 aa18.67■□□□□ 0.58
USP40-215ENST00000484528 IGHV4-61A0A0C4DH41 118 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 SH3PXD2BA1X283 911 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 CPSF4LA6NMK7 179 aaKnown RBP18.66■□□□□ 0.58
USP40-215ENST00000484528 ANGPT2O15123 496 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 FAM157CP0CG43 387 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 CD79AP11912 226 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 NPR2P20594 1047 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 AHCYP23526 432 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 ARR3P36575 388 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 PPOXP50336 477 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 PCBP3P57721 371 aaKnown RBP18.66■□□□□ 0.58
USP40-215ENST00000484528 SNTB2Q13425 540 aaKnown RBP18.66■□□□□ 0.58
USP40-215ENST00000484528 NPTX1Q15818 432 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 DUSP7Q16829 419 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 KRT80Q6KB66 452 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 ZNF813Q6ZN06 617 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 RBM45Q8IUH3 476 aaKnown RBP18.66■□□□□ 0.58
USP40-215ENST00000484528 GPR32P1Q8NGA4 272 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 OR6N1Q8NGY5 312 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 OR6S1Q8NH40 331 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 VANGL1Q8TAA9 524 aaPredicted RBP18.66■□□□□ 0.58
USP40-215ENST00000484528 MS4A3Q96HJ5 214 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 ANKRD27Q96NW4 1050 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 CGREF1Q99674 301 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 TMEM43Q9BTV4 400 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 REPIN1Q9BWE0 567 aaKnown RBP18.66■□□□□ 0.58
USP40-215ENST00000484528 RABEP2Q9H5N1 569 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 ZNF442Q9H7R0 627 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 MRPL39Q9NYK5 338 aaKnown RBP18.66■□□□□ 0.58
USP40-215ENST00000484528 NOX1Q9Y5S8 564 aa18.66■□□□□ 0.58
USP40-215ENST00000484528 LOC390937A0A1W2PQ73 354 aa18.65■□□□□ 0.58
USP40-215ENST00000484528 C11orf98E9PRG8 122 aa18.65■□□□□ 0.58
USP40-215ENST00000484528 M0QX08 132 aa18.65■□□□□ 0.58
USP40-215ENST00000484528 NDUFS8O00217 210 aa18.65■□□□□ 0.58
USP40-215ENST00000484528 APEHP13798 732 aaKnown RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms