RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 EIF4E2O60573 245 aaKnown RBP12.15□□□□□ -0.46
USP40-214ENST00000483519 RASGRP1O95267 797 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 ANXA2P07355 339 aaKnown RBP12.15□□□□□ -0.46
USP40-214ENST00000483519 NANOS3P60323 173 aaKnown RBP12.15□□□□□ -0.46
USP40-214ENST00000483519 FNDC3BQ53EP0 1204 aaKnown RBP12.15□□□□□ -0.46
USP40-214ENST00000483519 FAM220AQ7Z4H9 259 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 KREMEN2Q8NCW0 462 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 OR6K6Q8NGW6 343 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 MYADMQ96S97 322 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 ADAP2Q9NPF8 381 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 DUSP22Q9NRW4 184 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 UPB1Q9UBR1 384 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 IER3IP1Q9Y5U9 82 aa12.15□□□□□ -0.46
USP40-214ENST00000483519 EDDM13A0A1B0GTR0 161 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 OR6C74A6NCV1 312 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 SOX1O00570 391 aaPredicted RBP12.15□□□□□ -0.47
USP40-214ENST00000483519 SIGLEC5O15389 551 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 ATG12O94817 140 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 AK1P00568 194 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 TMIGD3P0DMS9 266 aaPredicted RBP12.15□□□□□ -0.47
USP40-214ENST00000483519 GTF2F2P13984 249 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 CMPK1P30085 196 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 RORAP35398 523 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 RPL35P42766 123 aaKnown RBP12.15□□□□□ -0.47
USP40-214ENST00000483519 MAGEB1P43366 347 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 FNTBP49356 437 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 SIGLEC14Q08ET2 396 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 FHL1Q13642 323 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 ELAVL3Q14576 367 aaKnown RBP12.15□□□□□ -0.47
USP40-214ENST00000483519 FAM74A1Q5RGS3 127 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 OR51S1Q8NGJ8 323 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 SPPL3Q8TCT6 385 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 PHYHIPLQ96FC7 376 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 C12orf57Q99622 126 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 ZNF426Q9BUY5 554 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 ALX4Q9H161 411 aaPredicted RBP12.15□□□□□ -0.47
USP40-214ENST00000483519 TSPAN10Q9H1Z9 355 aaPredicted RBP12.15□□□□□ -0.47
USP40-214ENST00000483519 SLC39A1Q9NY26 324 aa12.15□□□□□ -0.47
USP40-214ENST00000483519 CDV3Q9UKY7 258 aaKnown RBP12.15□□□□□ -0.47
USP40-214ENST00000483519 C19orf53Q9UNZ5 99 aaPredicted RBP12.15□□□□□ -0.47
USP40-214ENST00000483519 A0A1B0GWA3 101 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 DISC1C4P0D8 188 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 PMS2P2O95744 297 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 TACSTD2P09758 323 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 ACHEP22303 614 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 ADH7P40394 386 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 ZNF345Q14585 488 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 LILRA6Q6PI73 481 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 RAB11FIP2Q7L804 512 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 CDRT4Q8N9R6 151 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 TSNAXQ99598 290 aaKnown RBP12.14□□□□□ -0.47
USP40-214ENST00000483519 UQCC2Q9BRT2 126 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 TRAV14DV4A0A0A6YYC5 116 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 GGT3PA6NGU5 568 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 IDSB3KWA1 339 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 GPR37O15354 613 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 ZNF254O75437 659 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 CISD3P0C7P0 127 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 SPI1P17947 270 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 HNRNPA1L2Q32P51 320 aaKnown RBP12.14□□□□□ -0.47
USP40-214ENST00000483519 ALG10BQ5I7T1 473 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 BEST3Q8N1M1 668 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 SVBPQ8N300 66 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 KCNRGQ8N5I3 272 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 TMEM185AQ8NFB2 350 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 OR4D10Q8NGI6 311 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 OR52E1Q8NGJ3 308 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 OR5AK2Q8NH90 309 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 EDAQ92838 391 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 STACQ99469 402 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 USB1Q9BQ65 265 aaKnown RBP12.14□□□□□ -0.47
USP40-214ENST00000483519 SYNPO2LQ9H987 977 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 CERS4Q9HA82 394 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 FBXO34Q9NWN3 711 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 GPN3Q9UHW5 284 aaPredicted RBP12.14□□□□□ -0.47
USP40-214ENST00000483519 ENTPD2Q9Y5L3 495 aa12.14□□□□□ -0.47
USP40-214ENST00000483519 GPR89AB7ZAQ6 455 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 PRRT4C9JH25 899 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 OR2F2O95006 317 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 PAK4O96013 591 aaPredicted RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 GP1BAP07359 652 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 GPR89BP0CG08 455 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 ZNF888P0CJ79 500 aaPredicted RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 ADRA2CP18825 462 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 TLX1P31314 330 aaPredicted RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 RPL4P36578 427 aaKnown RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 PSMD4P55036 377 aaKnown RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 OR2F1Q13607 317 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 TRMT12Q53H54 448 aaKnown RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 HAGHLQ6PII5 290 aaPredicted RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 FIGNL1Q6PIW4 674 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 C12orf45Q8N5I9 185 aaPredicted RBP12.13□□□□□ -0.47
USP40-214ENST00000483519 DUSP19Q8WTR2 217 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 TRIM2Q9C040 744 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 C1orf198Q9H425 327 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 TMEM185BQ9H7F4 350 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 FLRT3Q9NZU0 649 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 CPNE7Q9UBL6 633 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 STEAP1Q9UHE8 339 aa12.13□□□□□ -0.47
USP40-214ENST00000483519 MCIDASD6RGH6 385 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms