RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 DPP10Q8N608 796 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 ANKS4BQ8N8V4 417 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 SMYD1Q8NB12 490 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 NUP37Q8NFH4 326 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 RNF217Q8TC41 542 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 PROX1Q92786 737 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 THOC1Q96FV9 657 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 ANKRD27Q96NW4 1050 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 EPYCQ99645 322 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 TMEM43Q9BTV4 400 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 PLK3Q9H4B4 646 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 RABEP2Q9H5N1 569 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 TMEM27Q9HBJ8 222 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 INTS9Q9NV88 658 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 LEF1Q9UJU2 399 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 FKBP7Q9Y680 259 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 IGHV2OR16-5A0A0B4J2B6 119 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 B9A039 149 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 M0R3G1 203 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 AKAP8O43823 692 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 IGHV4-31P0DP07 118 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 ZNF16P17020 682 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 IDH3GP51553 393 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 MTPNP58546 118 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 PUDPQ08623 228 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 DUSP7Q16829 419 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 CARD17Q5XLA6 110 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 VHLLQ6RSH7 139 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 SLC46A3Q7Z3Q1 461 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 C20orf196Q8IYI0 205 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 C11orf65Q8NCR3 313 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 GPR32P1Q8NGA4 272 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 OR4F15Q8NGB8 312 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 CKAP2Q8WWK9 683 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 ARHGDIGQ99819 225 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 EMC6Q9BV81 110 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 ASPNQ9BXN1 380 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 MED29Q9NX70 200 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 MRPL39Q9NYK5 338 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 SELENONQ9NZV5 590 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 SLC13A4Q9UKG4 626 aa16.29■□□□□ 0.2
CCDC88B-206ENST00000473405 FMO6PO60774 539 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 OPN1SWP03999 348 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 USF1P22415 310 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 PPOXP50336 477 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 CYP51A1Q16850 503 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 CHRFAM7AQ494W8 412 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 LINC00114Q6XXX2 140 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 WDR88Q6ZMY6 472 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 MDP1Q86V88 176 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 TSPYL5Q86VY4 417 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 TXNDC15Q96J42 360 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 MAGEB18Q96M61 343 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 CGREF1Q99674 301 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 ZNF442Q9H7R0 627 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 EVA1AQ9H8M9 152 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 NOX3Q9HBY0 568 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 B3GNT2Q9NY97 397 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 NOX1Q9Y5S8 564 aa16.28■□□□□ 0.2
CCDC88B-206ENST00000473405 SLC35F4A4IF30 521 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 HMGB1P1B2RPK0 211 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 NDUFS8O00217 210 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 PLPP3O14495 311 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 LYPD3O95274 346 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 THY1P04216 161 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 THBS4P35443 961 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 ARR3P36575 388 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 NR4A2P43354 598 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 PDLIM4P50479 330 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 RBBP4Q09028 425 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 NPRL3Q12980 569 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 PMS2P3Q13401 168 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 ZNF613Q6PF04 617 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 ZNF627Q7L945 461 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 OR4D11Q8NGI4 311 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 OR6T1Q8NGN1 323 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 SPATA3Q8NHX4 192 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 LRR1Q96L50 414 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 MCHR1Q99705 422 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 VRK1Q99986 396 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 KAT8Q9H7Z6 458 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 TMEM160Q9NX00 188 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 ZNF224Q9NZL3 707 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 NDUFAF1Q9Y375 327 aa16.27■□□□□ 0.2
CCDC88B-206ENST00000473405 M0QX08 132 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 ANGPT2O15123 496 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 CHP2O43745 196 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 HLA-HP01893 362 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 C8BP07358 591 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 CD247P20963 164 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 CAPZA2P47755 286 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 CRYBA2P53672 197 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 CAMK2DQ13557 499 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 PODNL1Q6PEZ8 512 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 PXKQ7Z7A4 578 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 RBM45Q8IUH3 476 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 CCDC36Q8IYA8 594 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 C10orf53Q8N6V4 93 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 ZNF75AQ96N20 296 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 PIMREGQ9BSJ6 248 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms