RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SEC14L4Q9UDX3 406 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 GIMAP2Q9UG22 337 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 OSGIN1Q9UJX0 560 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 NUP50Q9UKX7 468 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 SLC9A8Q9Y2E8 581 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 CMAHPQ9Y471 501 aa4.46□□□□□ -1.7
PTPN4-209ENST00000469511 TMED7-TICAM2A0A0A6YYA0 188 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 H3BNH8 94 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 CLDN34H7C241 214 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 M0QZ24 198 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 HOXA3O43365 443 aaPredicted RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 APOL3O95236 402 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 IFI6P09912 130 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 CLEC2LP0C7M8 214 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 LAMP1P11279 417 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ANPEPP15144 967 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 SDC1P18827 310 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 MAKP20794 623 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 APOBEC1P41238 236 aaKnown RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 IDH2P48735 452 aaKnown RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 SERPINB8P50452 374 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 AQP5P55064 265 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 RAG2P55895 527 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 SLC35A1P78382 337 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ROR2Q01974 943 aaKnown RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 POU3F1Q03052 451 aaPredicted RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ILF2Q12905 390 aaKnown RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 TP53BP2Q13625 1128 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 PDE7AQ13946 482 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 OR7A5Q15622 319 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF141Q15928 474 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 TSTQ16762 297 aaKnown RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 DEFB112Q30KQ8 113 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 CT83Q5H943 113 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 VAX1Q5SQQ9 334 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 OLFML2AQ68BL7 652 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 EMBQ6PCB8 327 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ZCCHC12Q6PEW1 402 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 FIP1L1Q6UN15 594 aaKnown RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ZDHHC24Q6UX98 284 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 C17orf107Q6ZR85 190 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 USP51Q70EK9 711 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 CREB3L2Q70SY1 520 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 GPAT4Q86UL3 456 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 PAQR4Q8N4S7 273 aaPredicted RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 STPG3Q8N7X2 389 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 POMGNT2Q8NAT1 580 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 FAM71CQ8NEG0 241 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 OR7A2PQ8NGA2 310 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 OR5AK3PQ8NH89 298 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF563Q8TA94 476 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 FBXO25Q8TCJ0 367 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 MRAPQ8TCY5 172 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 MAGEE2Q8TD90 523 aaPredicted RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ADAMTS15Q8TE58 950 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 SLC25A43Q8WUT9 341 aaPredicted RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 CNOT9Q92600 299 aaKnown RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 SLC25A28Q96A46 364 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 PPCDCQ96CD2 204 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ZHX1-C8orf76Q96EF9 292 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 STACQ99469 402 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ACTRT3Q9BYD9 372 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 HOXD1Q9GZZ0 328 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 OR51B6Q9H340 312 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 GSTO2Q9H4Y5 243 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 REEP4Q9H6H4 257 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 MARCH7Q9H992 704 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 OBP2BQ9NPH6 170 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 DUSP22Q9NRW4 184 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 SLC6A13Q9NSD5 602 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 PARPBPQ9NWS1 579 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 GAR1Q9NY12 217 aaKnown RBP4.45□□□□□ -1.7
PTPN4-209ENST00000469511 B3GNT2Q9NY97 397 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 UBAP1Q9NZ09 502 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF224Q9NZL3 707 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 ZIM2Q9NZV7 527 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 TAAR3PQ9P1P4 343 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 TRAPPC4Q9Y296 219 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 TMED7Q9Y3B3 224 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 HDGFL3Q9Y3E1 203 aa4.45□□□□□ -1.7
PTPN4-209ENST00000469511 DNAH9Q9NYC9 4486 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 CLPSL1A2RUU4 121 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 LIPT2A6NK58 231 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 AQP7P3A6NL99 342 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF587BE7ETH6 402 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 CCDC188H7C350 402 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 SCAMP2O15127 329 aaKnown RBP4.44□□□□□ -1.7
PTPN4-209ENST00000469511 EIF3HO15372 352 aaKnown RBP eCLIP4.44□□□□□ -1.7
PTPN4-209ENST00000469511 RAD51CO43502 376 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 DNPH1O43598 174 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 TRAF3IP2O43734 574 aaPredicted RBP4.44□□□□□ -1.7
PTPN4-209ENST00000469511 TBX19O60806 448 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 SEC22BO75396 215 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 KRT33AO76009 404 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 URI1O94763 535 aaPredicted RBP4.44□□□□□ -1.7
PTPN4-209ENST00000469511 ZNF432O94892 652 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 C6orf47O95873 294 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 NGFP01138 241 aa4.44□□□□□ -1.7
PTPN4-209ENST00000469511 PLA2G1BP04054 148 aaKnown RBP4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms