RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ARF1P84077 181 aaKnown RBP16.38■□□□□ 0.21
USP39-209ENST00000458268 TBRG1Q3YBR2 411 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 GLYATQ6IB77 296 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 MEX3DQ86XN8 651 aaKnown RBP16.38■□□□□ 0.21
USP39-209ENST00000458268 WDR31Q8NA23 367 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 GEMIN6Q8WXD5 167 aaKnown RBP16.38■□□□□ 0.21
USP39-209ENST00000458268 FBXW5Q969U6 566 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 SGTBQ96EQ0 304 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 PRRC1Q96M27 445 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 FNDC11Q9BVV2 318 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 AMBRA1Q9C0C7 1298 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 FKRPQ9H9S5 495 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 CRLF2Q9HC73 371 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 GPR35Q9HC97 309 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 MEPEQ9NQ76 525 aaPredicted RBP16.38■□□□□ 0.21
USP39-209ENST00000458268 BEX4Q9NWD9 120 aaPredicted RBP16.38■□□□□ 0.21
USP39-209ENST00000458268 ABCD2Q9UBJ2 740 aa16.38■□□□□ 0.21
USP39-209ENST00000458268 WNT11O96014 354 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 MT-ND1P03886 318 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 IFNGR1P15260 489 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 ST3GAL3Q11203 375 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 PHYHD1Q5SRE7 291 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 GKAP1Q5VSY0 366 aaPredicted RBP16.37■□□□□ 0.21
USP39-209ENST00000458268 CBLL1Q75N03 491 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 SLC35D2Q76EJ3 337 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 C17orf78Q8N4C9 275 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 C1orf162Q8NEQ5 155 aaPredicted RBP16.37■□□□□ 0.21
USP39-209ENST00000458268 MBD6Q96DN6 1003 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 TMEM204Q9BSN7 226 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 LINC00470Q9BZP3 86 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 POLR2J2Q9GZM3 115 aaKnown RBP16.37■□□□□ 0.21
USP39-209ENST00000458268 POLR2J3Q9H1A7 115 aaKnown RBP16.37■□□□□ 0.21
USP39-209ENST00000458268 B3GAT2Q9NPZ5 323 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 C20orf141Q9NUB4 165 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 ZNF229Q9UJW7 825 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 MED31Q9Y3C7 131 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 F8P00451 2351 aa16.37■□□□□ 0.21
USP39-209ENST00000458268 MCIDASD6RGH6 385 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 FZD7O75084 574 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 OR7A10O76100 309 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 ZNF432O94892 652 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 F13BP05160 661 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 IFI30P13284 250 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 FUT1P19526 365 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 RBM34P42696 430 aaKnown RBP16.36■□□□□ 0.21
USP39-209ENST00000458268 CSNK1A1P48729 337 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 NKX6-1P78426 367 aaPredicted RBP16.36■□□□□ 0.21
USP39-209ENST00000458268 ZNF672Q499Z4 452 aaPredicted RBP16.36■□□□□ 0.21
USP39-209ENST00000458268 SPNS3Q6ZMD2 512 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 SLC46A3Q7Z3Q1 461 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 WDFY1Q8IWB7 410 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 TMEM123Q8N131 208 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 ZNF611Q8N823 705 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 CCDC197Q8NCU1 140 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 ANKK1Q8NFD2 765 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 LILRB1Q8NHL6 650 aaPredicted RBP16.36■□□□□ 0.21
USP39-209ENST00000458268 GTPBP3Q969Y2 492 aaKnown RBP16.36■□□□□ 0.21
USP39-209ENST00000458268 ZNF837Q96EG3 531 aaPredicted RBP16.36■□□□□ 0.21
USP39-209ENST00000458268 CDRT15Q96T59 188 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 ULBP2Q9BZM5 246 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 SLC19A3Q9BZV2 496 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 CISD1Q9NZ45 108 aaKnown RBP16.36■□□□□ 0.21
USP39-209ENST00000458268 RPS6KA6Q9UK32 745 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 A4GNTQ9UNA3 340 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 MAGED1Q9Y5V3 778 aaPredicted RBP16.36■□□□□ 0.21
USP39-209ENST00000458268 ATP23Q9Y6H3 246 aa16.36■□□□□ 0.21
USP39-209ENST00000458268 MED13LQ71F56 2210 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 FUT4P22083 530 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 PTAFRP25105 342 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 CD40P25942 277 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 Q5PR19 223 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 C16orf89Q6UX73 402 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 SSX8Q7RTT4 187 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 PXKQ7Z7A4 578 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 CYP4Z1Q86W10 505 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 DEFB107AQ8IZN7 70 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 PGAM4Q8N0Y7 254 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 DEPDC4Q8N2C3 294 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 WFDC11Q8NEX6 87 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 SMAP2Q8WU79 429 aaPredicted RBP16.35■□□□□ 0.21
USP39-209ENST00000458268 HS6ST2Q96MM7 605 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 KCNS3Q9BQ31 491 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 ZNF426Q9BUY5 554 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 TAS2R5Q9NYW4 299 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 POFUT2Q9Y2G5 429 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 ALPK2Q86TB3 2170 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 AKAP9Q99996 3911 aa16.35■□□□□ 0.21
USP39-209ENST00000458268 LOC102725191A0A1B0GVB3 256 aa16.34■□□□□ 0.21
USP39-209ENST00000458268 SHISA9B4DS77 424 aa16.34■□□□□ 0.21
USP39-209ENST00000458268 hCG_2039718K7EN88 272 aa16.34■□□□□ 0.21
USP39-209ENST00000458268 SAGP10523 405 aaPredicted RBP16.34■□□□□ 0.21
USP39-209ENST00000458268 AQP2P41181 271 aa16.34■□□□□ 0.21
USP39-209ENST00000458268 SH3BGRP55822 239 aaPredicted RBP16.34■□□□□ 0.21
USP39-209ENST00000458268 LSM11P83369 360 aaKnown RBP eCLIP16.34■□□□□ 0.21
USP39-209ENST00000458268 RPL18Q07020 188 aaKnown RBP16.34■□□□□ 0.21
USP39-209ENST00000458268 NPRL3Q12980 569 aa16.34■□□□□ 0.21
USP39-209ENST00000458268 TOP3AQ13472 1001 aaPredicted RBP16.34■□□□□ 0.21
USP39-209ENST00000458268 TRAM2Q15035 370 aa16.34■□□□□ 0.21
USP39-209ENST00000458268 ANKRD16Q6P6B7 361 aa16.34■□□□□ 0.21
USP39-209ENST00000458268 ZNF730Q6ZMV8 503 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms