RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 TTC28Q96AY4 2481 aa4.89□□□□□ -1.63
VPS41-209ENST00000457055 LAMA2P24043 3122 aaKnown RBP4.89□□□□□ -1.63
VPS41-209ENST00000457055 CACNA1AO00555 2505 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 TMEM129A0AVI4 362 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 HYKKA2RU49 373 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 PSMB11A5LHX3 300 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 VSTM2BA6NLU5 285 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OR11H12B2RN74 326 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 H3BNX3 289 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 WNT10BO00744 389 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 SC5DO75845 299 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 RGS11O94810 467 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 C1RP00736 705 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 DCNP07585 359 aaKnown RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 CHRM4P08173 479 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 HOXC4P09017 264 aaPredicted RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 ACSM4P0C7M7 580 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 SNHG28P0DPA3 235 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 IRF1P10914 325 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 HLA-GP17693 338 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 GABRR2P28476 465 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 SDC4P31431 198 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 GJC1P36383 396 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 CSNK1A1P48729 337 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 TTPAP49638 278 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 GPR143P51810 404 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 CLRN1P58418 232 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 PPIAP62937 165 aaKnown RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 SIRPAP78324 504 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 TLE4Q04727 773 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 FPGSQ05932 587 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 CTTNQ14247 550 aaKnown RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 FGFBP1Q14512 234 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 TRAM1Q15629 374 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 COL28A1Q2UY09 1125 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 ZNF750Q32MQ0 723 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 FAM174BQ3ZCQ3 159 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OGFRL1Q5TC84 451 aaPredicted RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 TMEM198Q66K66 360 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 LEMD1Q68G75 181 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 TMPRSS11FQ6ZWK6 438 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 ZNF572Q7Z3I7 529 aaPredicted RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 PEG10Q86TG7 708 aaKnown RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 ISCA2Q86U28 154 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 RANBP3LQ86VV4 465 aaPredicted RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 CBWD2Q8IUF1 395 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 WDFY1Q8IWB7 410 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 LAX1Q8IWV1 398 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 LGI3Q8N145 548 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 PELI3Q8N2H9 469 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 STPG2Q8N412 459 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 TMEM199Q8N511 208 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 ZNF283Q8N7M2 679 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 NANOGP1Q8N7R0 232 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 ATP6V1C2Q8NEY4 427 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OR2AK2Q8NG84 335 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OR11H1Q8NG94 326 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OR4F15Q8NGB8 312 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OR56A1Q8NGH5 318 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OR10Q1Q8NGQ4 319 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OR13D1Q8NGV5 346 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 OR11H2Q8NH07 326 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 SLC35B2Q8TB61 432 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 FAM45AQ8TCE6 357 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 DNAJC9Q8WXX5 260 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 IGSF8Q969P0 613 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 SLC45A3Q96JT2 553 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 MARK4Q96L34 752 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 Q96MT0 163 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 VSTM2LQ96N03 204 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 MUS81Q96NY9 551 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 HBEGFQ99075 208 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 EPYCQ99645 322 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 MCRIP2Q9BUT9 160 aaKnown RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 DUSP16Q9BY84 665 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 BARHL1Q9BZE3 327 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 FAM124BQ9H5Z6 455 aaPredicted RBP4.88□□□□□ -1.63
VPS41-209ENST00000457055 EGLN3Q9H6Z9 239 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 TPT1P8Q9HAU6 139 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 POLE4Q9NR33 117 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 BABAM1Q9NWV8 329 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 ANKRD10Q9NXR5 420 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 GLTPQ9NZD2 209 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 KIF25Q9UIL4 384 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 ICAM5Q9UMF0 924 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 STYXL1Q9Y6J8 313 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 CDH10Q9Y6N8 788 aa4.88□□□□□ -1.63
VPS41-209ENST00000457055 MYO9BQ13459 2157 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 KBTBD11-OT1A0A1B0GTJ5 212 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.87□□□□□ -1.63
VPS41-209ENST00000457055 A0A1B0GVI7 797 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.87□□□□□ -1.63
VPS41-209ENST00000457055 PRSS37A4D1T9 235 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 ZNF840PA6NDX5 716 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 CENPXA8MT69 81 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 HHLA1C9JL84 531 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 E9PQ18 207 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 TMX2-CTNND1H3BSU7 103 aa4.87□□□□□ -1.63
VPS41-209ENST00000457055 H7C2Y5 167 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms